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Citing CMDGA
Clear Filters
Annotation type
1710
candidate regulatory elements
1357
target gene predictions
977
histone modifications
944
chromatin state
888
accessible chromatin
726
binding sites
683
gene expression
171
eQTL
166
differential activity
136
variant allelic effects
74
Fine-mapped variants
hQTL
5
sQTL
4
variant to gene
3
meQTL
3
other
3
pQTL
1
caQTL
1
representative DNase hypersensitivity sites
Annotation Category
1
Genetic variant effects
1
cis-regulatory elements
Annotation type Category
1
ATAC-seq
1
DNase-seq
Available data
1
bed bed3+
1
tsv
File set status
2
released
Genome assembly (visualization)
1
hg19
Organism
2
Homo sapiens
Biosample type
1
in vitro differentiated cells
1
tissue
Biosample term
1
liver
1
myocyte
Organ
1
liver
Date released
October, 2022
February, 2023
1
February, 2021
1
May, 2022
Software used
1
altius-index
1
eigenmt
1
rasqual
Lab
1
AMP-T2D consortium
1
Karen Mohlke, UNC
Project
2
AMP
RFA
2
AMP
annotation_type!
hQTL
month_released!
February, 2023
October, 2022
Showing 2 of 2 results
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Download
FileSet
DSR797VBE
released
Annotation file set
: caQTL annotation of liver tissue from pilot study(AJHG2021) in Mohlke Lab
Lab:
Karen Mohlke, UNC
Project:
AMP
FileSet
DSR124JTW
released
Annotation file set
: DNase I Hypersensitive Sites (DHSs) defined using a consensus-based approach (https://github.com/Altius/Index) across 733 human biosamples. Each DHS is annotated with a signal level which can be used as a confidence score, as well as estimates for its summit position and summit variability (as captured by the 'core' coordinates).
Lab:
AMP-T2D consortium
Project:
AMP