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Schema
Citing CMDGA
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Annotation type
3
Fine-mapped variants
3
chromatin state
2
accessible chromatin
2
eQTL
1
caQTL
1
gene expression
1
variant allelic effects
Annotation Category
2
Genetic variant effects
Annotation type Category
2
ATAC-seq
DNase-seq
Available data
2
bed bed3+
File set status
2
released
Genome assembly (visualization)
1
GRCh38
1
hg19
Organism
2
Homo sapiens
Biosample type
2
tissue
Biosample term
6
fibroblast
4
endothelial cell
4
macrophage
3
enterocyte
3
myofibroblast cell
3
smooth muscle cell
2
CD4-positive helper T cell
2
MIN6
2
Schwann cell
2
T cell
2
basal cell
2
coronary artery
2
epithelial cell of esophagus
2
goblet cell
2
skeletal muscle fiber
2
vascular associated smooth muscle cell
1
Adipose SGBS cell line (adipocyte)
1
EndoC_BH1
1
Heart fetal (cardiac muscle cell)
1
Liver fetal (hepatocyte)
1
Pancreatic progenitors (progenitor cell of endocrine pancreas)
1
Preadipose SGBS cell line (adipocyte)
1
Satellite Cells, Skeletal Muscle
1
adipocyte
1
adipose tissue
1
bronchial goblet cell
1
cardiac muscle cell
1
cardiac precursors (cardiac muscle cell)
1
cardiomyocytes (cardiac muscle cell)
1
cortical cell of adrenal gland
1
fibroblast of the aortic adventitia
1
granulosa cell
1
heart left ventricle
1
hepatocyte
1
islet of Langerhans
1
keratinocyte
1
liver
1
luminal epithelial cell of prostatic duct
1
lymphocyte of B lineage
1
mammary gland epithelial cell
1
mast cell
1
mesenchymal stem cell
1
mesothelial cell
1
naive t cell
1
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
pancreatic delta cell
1
pancreatic ductal cell
1
pancreatic endocrine cell
1
pancreatic polypeptide-secreting cell
1
parietal cell
1
peptic cell
1
purified protein and synthetic DNA oligo binding assay
1
right atrium auricular region
1
smooth muscle cell of the coronary artery
1
subcutaneous adipose tissue
1
thoracic aorta
1
thyroid follicular cell
1
tibial artery
1
tibial nerve
1
type I muscle cell
1
type II muscle cell
1
type II pneumocyte
Organ
2
artery
2
blood vessel
2
heart
2
vasculature
Date released
1
February, 2023
1
May, 2020
Software used
1
deltasvm
1
rasqual
Lab
2
AMP-T2D consortium
Project
2
AMP
RFA
2
AMP
annotation_type_category!
DNase-seq
Showing 2 of 2 results
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Download
FileSet
DSR575ALX
released
Annotation file set
: Chromatin accessibility QTLs from bulk coronary artery of ATAC-seq in 35 human coronary artery patients
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR985HJQ
released
Annotation file set
: Genetic variants with deltaSVM predictions in coronary artery ATAC-seq
Lab:
AMP-T2D consortium
Project:
AMP