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Citing CMDGA
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Annotation type
56
accessible chromatin
49
target gene predictions
48
candidate regulatory elements
30
gene expression
26
chromatin state
21
binding sites
12
differential activity
11
histone modifications
10
variant allelic effects
6
eQTL
2
caQTL
Annotation Category
2
Genetic variant effects
Annotation type Category
2
snATAC-seq
Available data
2
bed bed3+
File set status
2
released
Genome assembly (visualization)
1
GRCh38
1
hg19
Organism
2
Homo sapiens
Biosample type
2
primary cell
Biosample term
1
fibroblast of the aortic adventitia
1
mesenchymal stem cell
Organ
2
blood vessel
2
connective tissue
2
epithelium
2
musculature of body
2
vasculature
1
artery
1
heart
Date released
1
February, 2023
1
October, 2022
Software used
2
rasqual
1
eigenmt
Lab
1
AMP-T2D consortium
1
Stephen Parker, UMich
Project
2
AMP
RFA
1
AMP
1
AMP2
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Download
FileSet
DSR077AGV
released
Annotation file set
: Chromatin accessibility QTLs in fibroblasts passing genome-wide multiple testing correction (5% FDR) of ATAC-seq in 35 human coronary artery patients
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR450DUL
released
Annotation file set
: Chromatin site QTLs of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP