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Annotation type
17
accessible chromatin
10
gene expression
7
target gene predictions
3
caQTL
3
candidate regulatory elements
2
binding sites
2
eQTL
2
variant allelic effects
1
histone modifications
Annotation Category
3
Genetic variant effects
Annotation type Category
3
snATAC-seq
Available data
2
bed bed3+
1
tsv
File set status
3
released
Genome assembly (visualization)
1
GRCh38
1
hg19
Organism
3
Homo sapiens
Biosample type
3
primary cell
Biosample term
3
endothelial cell
2
CD4-positive helper T cell
2
macrophage
2
smooth muscle cell
1
T cell
1
adipocyte
1
coronary artery
1
fibro-adipogenic progenitor cell
1
fibroblast of the aortic adventitia
1
liver
1
mesenchymal stem cell
1
neural cell
1
neuromuscular junction nucleus
1
skeletal muscle satellite cell
1
smooth muscle cell of the coronary artery
1
type 1 muscle cell
1
type 2a muscle cell
1
type 2x muscle cell
1
type I muscle cell
1
type II muscle cell
Organ
3
epithelium
Life stage
1
adult
Date released
1
February, 2023
1
July, 2025
1
October, 2022
Software used
2
rasqual
1
eigenmt
1
qTLtools
Lab
2
Stephen Parker, UMich
1
AMP-T2D consortium
Project
3
AMP
Collection Tags
1
T2DKP
1
CMDGA
1
DGA
RFA
2
AMP2
1
AMP
Showing 3 of 3 results
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FileSet
DSR726WRZ
released
Annotation file set
: caQTL results in each cell type cluster identified from snRNA+snATAC profiling of human skeletal muscle - endothelial cell
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR375DYB
released
Annotation file set
: Chromatin accessibility QTLs in endothelial cells passing genome-wide multiple testing correction (5% FDR) of ATAC-seq in 35 human coronary artery patients
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR259FVK
released
Annotation file set
: Chromatin site QTLs of endothelial cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP