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Annotation type
  • 2640pQTL
  • 1709candidate regulatory elements
  • 1357target gene predictions
  • 977histone modifications
  • 944chromatin state
  • 913accessible chromatin
  • 726binding sites
  • 689gene expression
  • 189eQTL
  • 172differential activity
  • 138variant allelic effects
  • 84Fine-mapped variants
  • 7sQTL
  • 6caQTL
  • 5hQTL
  • 4variant to gene
  • 3meQTL
  • 3other
  • 1representative DNase hypersensitivity sites
Annotation Category
  • 6Genetic variant effects
Annotation type Category
  • 4snATAC-seq
  • 2ATAC-seq
Available data
  • 6bed bed3+
File set status
  • 6released
Genome assembly (visualization)
  • 5GRCh38
  • 1hg19
Organism
  • 6Homo sapiens
Biosample type
  • 4primary cell
  • 2tissue
Biosample term
  • 1coronary artery
  • 1endothelial cell
  • 1fibroblast of the aortic adventitia
  • 1liver
  • 1macrophage
  • 1smooth muscle cell of the coronary artery
Organ
  • 3blood vessel
  • 3vasculature
  • 2artery
  • 2heart
  • 1connective tissue
  • 1epithelium
  • 1liver
Date released
  • October, 2022
  • 5February, 2023
  • 1May, 2022
Software used
  • 6rasqual
  • 1eigenmt
Lab
  • 5AMP-T2D consortium
  • 1Karen Mohlke, UNC
Project
  • 6AMP
Collection Tags
  • 5CMDGA
  • 1AMP
  • 1DGA
RFA
  • 6AMP
month_released!
  • October, 2022

Showing 6 of 6 results

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  • FileSet

    DSR375DYB

    released

    Annotation file set: Chromatin accessibility QTLs in endothelial cells passing genome-wide multiple testing correction (5% FDR) of ATAC-seq in 35 human coronary artery patients
    Lab: AMP-T2D consortium
    Project: AMP
  • FileSet

    DSR077AGV

    released

    Annotation file set: Chromatin accessibility QTLs in fibroblasts passing genome-wide multiple testing correction (5% FDR) of ATAC-seq in 35 human coronary artery patients
    Lab: AMP-T2D consortium
    Project: AMP
  • FileSet

    DSR868SOF

    released

    Annotation file set: Chromatin accessibility QTLs in macrophages passing genome-wide multiple testing correction (5% FDR) of ATAC-seq in 35 human coronary artery patients
    Lab: AMP-T2D consortium
    Project: AMP
  • FileSet

    DSR702NJX

    released

    Annotation file set: Chromatin accessibility QTLs in smooth muscle cells passing genome-wide multiple testing correction (5% FDR) of ATAC-seq in 35 human coronary artery patients
    Lab: AMP-T2D consortium
    Project: AMP
  • FileSet

    DSR575ALX

    released

    Annotation file set: Chromatin accessibility QTLs from bulk coronary artery of ATAC-seq in 35 human coronary artery patients
    Lab: AMP-T2D consortium
    Project: AMP
  • FileSet

    DSR797VBE

    released

    Annotation file set: caQTL annotation of liver tissue from pilot study(AJHG2021) in Mohlke Lab
    Lab: Karen Mohlke, UNC
    Project: AMP
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