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Annotation type
89
accessible chromatin
88
candidate regulatory elements
78
target gene predictions
51
gene expression
48
chromatin state
31
binding sites
25
eQTL
25
histone modifications
16
differential activity
16
variant allelic effects
8
Fine-mapped variants
3
caQTL
2
pQTL
2
sQTL
Annotation Category
3
Genetic variant effects
Annotation type Category
3
snATAC-seq
Available data
2
bed bed3+
1
tsv
File set status
3
released
Genome assembly (visualization)
1
GRCh38
1
hg19
Organism
3
Homo sapiens
Biosample type
3
primary cell
Biosample term
1
adipocyte
1
fibroblast of the aortic adventitia
1
mesenchymal stem cell
Organ
6
musculature of body
3
blood vessel
3
connective tissue
3
epithelium
3
vasculature
2
artery
2
heart
1
liver
Life stage
1
adult
Date released
1
February, 2023
1
July, 2025
1
October, 2022
Software used
2
rasqual
1
eigenmt
1
qTLtools
Lab
2
Stephen Parker, UMich
1
AMP-T2D consortium
Project
3
AMP
Collection Tags
1
T2DKP
1
CMDGA
1
DGA
RFA
2
AMP2
1
AMP
Showing 3 of 3 results
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FileSet
DSR458YMM
released
Annotation file set
: caQTL results in each cell type cluster identified from snRNA+snATAC profiling of human skeletal muscle - adipocyte
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR077AGV
released
Annotation file set
: Chromatin accessibility QTLs in fibroblasts passing genome-wide multiple testing correction (5% FDR) of ATAC-seq in 35 human coronary artery patients
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR450DUL
released
Annotation file set
: Chromatin site QTLs of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP