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Schema
Citing CMDGA
Clear Filters
Annotation type
7
histone modifications
accessible chromatin
4
binding sites
4
candidate regulatory elements
4
target gene predictions
3
chromatin state
1
gene expression
1
variant allelic effects
Annotation Category
4
cis-regulatory elements
Annotation type Category
3
ChIP-seq
3
DNase-seq
1
snATAC-seq
Available data
4
bed bed3+
File set status
4
released
Genome assembly (visualization)
4
hg19
1
GRCh38
Organism
4
Homo sapiens
Biosample type
2
cell line
2
primary cell
Biosample term
13
liver
4
hepatocyte
2
HepG2
2
hepatic stellate cell
2
right lobe of liver
1
HuH-7
1
HuH-7.5
Disease term
1
hepatocellular carcinoma
1
liver disease
Organ
4
liver
2
connective tissue
Life stage
2
adult
1
child
1
young adult
Date released
2
September, 2022
1
February, 2021
1
May, 2024
Software used
2
r
1
encode-ccres
Lab
3
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Project
4
AMP
RFA
3
AMP
1
AMP2
annotation_type!
accessible chromatin
Showing 4 of 4 results
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FileSet
DSR128SRA
released
Annotation file set
: Candidate cis-Regulatory Elements (cCREs) of hepatic stellate cell derived from liver snATAC-seq
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR473QIA
released
Annotation file set
: Candidate regulatory elements for BSS00558 HepG2 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR613BLA
released
Annotation file set
: Candidate regulatory elements for BSS00553 hepatic stellate cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR707QFW
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE HepG2
Lab:
AMP-T2D consortium
Project:
AMP