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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
1
accessible chromatin
1
binding sites
1
chromatin state
1
histone modifications
1
target gene predictions
Annotation Category
4
cis-regulatory elements
Annotation type Category
4
ChIP-seq
2
DNase-seq
Available data
3
bed bed3+
1
bed bed9
File set status
4
released
Genome assembly (visualization)
4
hg19
1
GRCh38
Organism
4
Homo sapiens
Biosample type
4
cell line
Biosample term
86
monocyte
60
stomach
59
heart
50
brain
49
muscle of arm
47
kidney
44
small intestine
42
adrenal gland
42
muscle of leg
42
placenta
41
large intestine
41
muscle of back
40
common myeloid progenitor, CD34-positive
38
CD8-positive, alpha-beta T cell
32
thymus
30
hematopoietic multipotent progenitor cell
30
right kidney
29
renal cortex interstitium
28
renal pelvis
27
left kidney
25
neural progenitor cell
24
B cell
24
liver
23
CD4-positive, alpha-beta memory T cell
22
spinal cord
21
spleen
20
heart left ventricle
16
MCF-7
16
foreskin keratinocyte
15
CD8-positive, alpha-beta memory T cell
15
K562
15
sigmoid colon
14
trophoblast cell
13
adipose tissue
13
mononuclear cell
12
CD14-positive monocyte
12
body of pancreas
12
chorionic villus
12
gastrocnemius medialis
11
CD4-positive, alpha-beta T cell
11
adipocyte
11
breast cancer cell
11
endocrine pancreas
11
endothelial cell of umbilical vein
11
heart right ventricle
11
thyroid gland
10
Peyer's patch
10
caudate nucleus
10
foreskin fibroblast
10
layer of hippocampus
10
muscle of trunk
10
ovary
10
psoas muscle
10
skeletal muscle tissue
10
temporal lobe
10
testis
9
HepG2
9
T cell
9
T-helper 1 cell
9
cardiac muscle cell
9
gastric cancer cell
9
hepatocyte
9
keratinocyte
9
neurosphere
9
regulatory T cell
9
substantia nigra
9
transverse colon
8
H9
8
HeLa-S3
8
Rhabdomyosarcoma
8
T-helper 17 cell
8
T-helper 2 cell
8
angular gyrus
8
aorta
8
bronchial epithelial cell
8
colonic mucosa
8
dermis blood vessel endothelial cell
8
esophagus squamous epithelium
8
fibroblast of cardiac tissue
8
left cardiac atrium
8
natural killer cell
8
retina
8
tibial nerve
7
22Rv1
7
SK-N-DZ
7
ascending aorta
7
breast epithelium
7
cingulate gyrus
7
diffuse intrinsic pontine glioma
7
duodenal mucosa
7
embryonic stem cell
7
endodermal cell
7
epithelial cell of prostate
7
esophageal adenocarcinoma
7
esophagus muscularis mucosa
7
fibroblast of dermis
7
left renal cortex interstitium
7
left renal pelvis
7
lower leg skin
7
mammary epithelial cell
7
mammary gland epithelial cell
7
mature neutrophil
7
mesenchymal stem cell
7
neuroblastoma cell
7
right renal pelvis
6
B-lymphoblastoid cell line
6
Chondroid Chordoma
6
SK-N-SH
6
cerebellum
6
chorion membrane
6
coronary artery
6
endometrium adenocarcinoma
6
esophagus
6
eye
6
fibroblast of breast
6
foreskin melanocyte
6
gastroesophageal sphincter
6
hESC cell
6
immortal human breast epithelial cell line cell
6
muscle layer of duodenum
6
neutrophil
6
omental fat pad
6
pancreas
6
prostate gland
6
right renal cortex interstitium
6
skeletal muscle myoblast
5
CD14-positive, CD16-negative classical monocyte
5
GM12878
5
HEK293
5
LNCaP clone FGC
5
NAMALWA cell
5
T-cell acute lymphoblastic leukemia
5
T47D
5
dermis lymphatic vessel endothelial cell
5
kidney tubule cell
5
limb
5
liposarcoma
5
mesodermal cell
5
myoepithelial cell of mammary gland
5
parathyroid adenoma
5
stomach smooth muscle
5
thoracic aorta
5
tongue
4
Brodmann (1909) area 46
4
CD1c-positive myeloid dendritic cell
4
CMK
4
GM06990
4
GM12864
4
GM12865
4
GM12875
4
GM23248
4
H1-hESC
4
HAP-1
4
HL-60
4
HT-29
4
KARPAS-422 cell
4
LHCN-M2
4
MG63
4
MM.1S
4
OCI-LY1
4
OCI-LY7
4
PC-3
4
RPMI8226
4
RWPE1
4
SK-MEL-5
4
SK-N-MC
4
SW480
4
T-cell
4
WERI-Rb-1
4
alternatively activated macrophage
4
astrocyte
4
choroid plexus epithelial cell
4
fibroblast of mammary gland
4
fibroblast of pulmonary artery
4
frontal cortex
4
germinal matrix
4
globus pallidus
4
hepatic stellate cell
4
melanoma cell
4
mucosa of rectum
4
naive T cell
4
neuroblastoma cell line
4
neuronal stem cell
4
osteoblast
4
skeletal muscle satellite cell
4
squamous cell lung carcinoma
4
trophoblast
4
umbilical cord
3
A172
3
A673
3
ACC112
3
ACHN
3
AG04449 cell
3
AG04450 cell
3
AG09309 cell
3
AG09319 cell
3
AG10803 cell
3
Ammon's horn
3
BE(2)-C
3
BJ cell
Disease term
2
osteosarcoma
Organ
4
bone element
Life stage
2
child
1
young adult
Date released
2
February, 2021
2
September, 2022
Software used
1
chromhmm
1
encode-ccres
1
macs
1
r
Lab
4
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
organ_slims!
lung
Showing 4 of 4 results
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Download
FileSet
DSR401QAB
released
Annotation file set
: Candidate regulatory elements for BSS01267 MG63 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR048KGB
released
Annotation file set
: Chromatin states for BSS01267 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR585UIG
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE MG63
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR685YUE
released
Annotation file set
: Histone modifications annotation for Bone MG-63 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP