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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
1
accessible chromatin
1
candidate regulatory elements
1
chromatin state
1
target gene predictions
Annotation Category
2
cis-regulatory elements
1
Target gene links
Annotation type Category
3
ChIP-seq
2
DNase-seq
Available data
2
bed bed3+
1
bed bed9
File set status
3
released
Genome assembly (visualization)
3
hg19
1
GRCh38
Organism
3
Homo sapiens
Biosample type
3
cell line
Biosample term
63
HeLa-S3
58
A549
41
H1-hESC
37
K562
20
MCF-7
19
HFFc6
16
H9
12
GM12878
10
pituitary stalk
9
SK-N-SH
9
endometrium adenocarcinoma
9
immortal human breast epithelial cell line cell
9
lymphocyte
8
22Rv1
8
SK-N-DZ
7
HepG2
7
LNCaP clone FGC
7
T47D
7
WI38
6
HCT116
6
NAMALWA cell
5
A673
5
HAP-1
5
HEK293
5
HT-29
5
IMR-90
5
KARPAS-422 cell
5
MM.1S
5
OCI-LY7
5
PC-9
5
Panc1
5
iPS DF 19.11
4
A172
4
ACC112
4
ACHN
4
C4-2B
4
CMK
4
Caki2
4
CyT49
4
DND-41
4
DOHH2
4
Daoy
4
EH
4
EL
4
ELF-1
4
ELR
4
G401
GM04503
4
GM04504
4
GM06990
4
GM08714
4
GM10248
4
GM10266
4
GM12864
4
GM12865
4
GM12875
4
GM18507
4
GM19238
4
GM19239
4
GM19240
4
GM23248
4
GM23338
4
H4
4
H54
4
H7-hESC
4
HL-60
4
HS-27A
4
HS-5
4
HT1080
4
HUES48
4
HUES6
4
HUES64
4
HUES8
4
KBM-7
4
KMS-11
4
KOPT-K1
4
L1-S8
4
LHCN-M2
4
LoVo cell
4
Loucy
4
M059J
4
MG63
4
NB4
4
NCI-H929
4
OCI-LY1
4
OCI-LY3
4
PC-3
4
RCC 7860
4
RPMI7951
4
RPMI8226
4
RWPE1
4
RWPE2
4
SJCRH30
4
SJSA1
4
SK-MEL-5
4
SK-N-MC
4
SU-DHL-6
4
SW480
4
UCSF-4
4
WERI-Rb-1
4
iPS DF 19.7
4
iPS DF 6.9
4
iPS-11a
4
iPS-15b
4
iPS-18a
4
iPS-18c
4
iPS-20b
4
iPSC derived cell line
3
8988T
3
AG04449 cell
3
AG04450 cell
3
AG08395 cell
3
AG08396 cell
3
AG09309 cell
3
AG09319 cell
3
AG10803 cell
3
AG20443
3
BE(2)-C
3
BJ cell
3
COLO829
3
CWRU1
3
Caco-2 cell
3
ES-I3
3
GM03348
3
GM12891
3
GM12892
3
HEK293T
3
HK-2 cell
3
HPDE6-E6E7
3
HTR-8/Svneo
3
HuH-7
3
HuH-7.5
3
L1-S8R
3
LNCAP
3
MCF 10A
3
NCI-H226 cell
3
NCI-H460 cell
3
NT2-D1 cell
3
VCaP cell
3
colon carcinoma
3
colon epithelial cell
3
foreskin fibroblast
3
iPS DF 4.7 Cell Line
3
iPS-NIHi11
3
iPS-NIHi7
3
medulloblastoma
3
renal cell carcinoma
3
urothelium cell line
2
AG10803
2
BJAB cell
2
ESC derived cell line
2
Jurkat
2
MCF 10A cell
2
NAMALWA
2
THP-1
2
U937
1
AG04449
1
AG04450
1
AG09309
1
AG09319
1
B-lymphoblastoid cell line
1
BE2C
1
BJ
1
BL-2 cell
1
Caco-2
1
D721Med
1
DG-75 cell
1
EndoC_BH1
1
GM12801
1
GM12873
1
GM12874
1
GM13976
1
GM13977
1
GM18486
1
GM18505
1
GM18508
1
GM18516
1
GM18522
1
GM19099
1
GM19141
1
GM19193
1
GM19204
1
GM20000
1
H1
1
H7
1
HCEC 1CT
1
HCT-116 cell
1
HFF-Myc
1
HK-2
1
Ishikawa
1
JVM-2 cell
1
Jurkat, Clone E6-1
1
Karpas-422
1
LoVo
1
MDA-MB-231 cell
1
NCCIT cell
1
NCI-H226
1
NCI-H460
1
NT2/D1
1
RCC
Life stage
3
adult
Date released
3
September, 2022
Software used
2
r
1
chromhmm
Lab
3
AMP-T2D consortium
Project
3
AMP
RFA
3
AMP
biosample_term_name!
GM04503
Showing 3 of 3 results
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Download
FileSet
DSR073EBX
released
Annotation file set
: Candidate regulatory elements for BSS00064 AG08396 cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR794DTW
released
Annotation file set
: Target gene predictions for BSS00064 AG08396 cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR933LDH
released
Annotation file set
: Chromatin states for BSS00064 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP