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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
3
target gene predictions
2
candidate regulatory elements
1
accessible chromatin
1
binding sites
1
chromatin state
1
histone modifications
Annotation Category
3
Target gene links
3
cis-regulatory elements
Annotation type Category
4
ChIP-seq
4
DNase-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
5
bed bed3+
1
bed bed9
File set status
6
released
Genome assembly (visualization)
6
hg19
1
GRCh38
Organism
6
Homo sapiens
Biosample type
5
in vitro differentiated cells
1
stem cell
Biosample term
80
stomach
78
heart
66
lung
65
muscle of arm
63
HeLa-S3
63
brain
61
small intestine
59
adrenal gland
59
kidney
58
A549
56
muscle of leg
55
placenta
54
common myeloid progenitor, CD34-positive
54
large intestine
54
muscle of back
52
left lung
45
thymus
44
right lung
42
H1-hESC
40
right kidney
39
hematopoietic multipotent progenitor cell
38
renal cortex interstitium
37
K562
36
left kidney
32
B cell
32
CD4-positive, alpha-beta memory T cell
32
liver
31
CD14-positive monocyte
29
spinal cord
28
spleen
26
heart left ventricle
22
CD8-positive, alpha-beta memory T cell
22
sigmoid colon
21
adipose tissue
21
trophoblast cell
20
MCF-7
19
HFFc6
19
foreskin keratinocyte
19
mononuclear cell
19
psoas muscle
18
ovary
17
body of pancreas
17
gastrocnemius medialis
17
muscle of trunk
17
thyroid gland
17
transverse colon
16
H9
16
adipocyte
16
chorionic villus
16
heart right ventricle
15
endocrine pancreas
15
endothelial cell of umbilical vein
14
CD4-positive, alpha-beta T cell
14
fibroblast of lung
14
natural killer cell
14
neural progenitor cell
13
CD8-positive, alpha-beta T cell
13
Peyer's patch
13
layer of hippocampus
13
neurosphere
13
pancreas
13
testis
13
tibial nerve
12
GM12878
12
T cell
12
T-helper 1 cell
12
aorta
12
caudate nucleus
12
foreskin fibroblast
12
pericyte cell
12
regulatory T cell
12
retina
12
skeletal muscle tissue
12
upper lobe of left lung
11
T-helper 17 cell
11
T-helper 2 cell
11
fibroblast of dermis
11
keratinocyte
11
mesenchymal stem cell
11
temporal lobe
10
angular gyrus
10
breast epithelium
10
dermis blood vessel endothelial cell
10
esophagus squamous epithelium
10
fibroblast of cardiac tissue
10
left renal cortex interstitium
10
lower leg skin
10
mammary gland epithelial cell
10
pituitary stalk
10
skeletal muscle myoblast
10
smooth muscle cell
10
substantia nigra
9
SK-N-SH
9
ascending aorta
9
cardiac muscle cell
9
chorion membrane
9
cingulate gyrus
9
colonic mucosa
9
coronary artery
9
duodenal mucosa
9
endometrium adenocarcinoma
9
epithelial cell of prostate
9
esophagus
9
esophagus muscularis mucosa
9
hepatocyte
9
immortal human breast epithelial cell line cell
9
left cardiac atrium
9
lymphocyte
9
mucosa of rectum
9
naive T cell
9
neutrophil
9
omental fat pad
9
parathyroid adenoma
9
right renal cortex interstitium
9
stomach smooth muscle
9
trophoblast
8
22Rv1
8
SK-N-DZ
8
bronchial epithelial cell
8
endodermal cell
8
eye
8
fibroblast of breast
8
muscle layer of colon
8
muscle layer of duodenum
8
myoepithelial cell of mammary gland
8
prostate gland
8
thoracic aorta
8
tibial artery
8
tongue
7
HepG2
7
LNCaP clone FGC
7
T47D
7
WI38
7
astrocyte
7
cerebellum
7
endothelial cell
7
gastroesophageal sphincter
7
kidney tubule cell
7
limb
7
mature neutrophil
7
right atrium auricular region
7
right cardiac atrium
7
vagina
6
Brodmann (1909) area 46
6
HCT116
6
NAMALWA cell
6
T-cell
6
colon epithelial cell
6
dendritic cell
6
dermis lymphatic vessel endothelial cell
6
embryonic stem cell
6
foreskin melanocyte
6
frontal cortex
6
mesendoderm
6
mesodermal cell
muscle cell
6
naive thymus-derived CD4-positive, alpha-beta T cell
6
olfactory receptor cell
6
skeletal muscle satellite cell
6
skin fibroblast
6
urinary bladder
6
uterus
5
A673
5
Ammon's horn
5
CD14-positive, CD16-negative classical monocyte
5
HAP-1
5
HEK293
5
HT-29
5
IMR-90
5
KARPAS-422 cell
5
MM.1S
5
OCI-LY7
5
PC-9
5
Panc1
5
alternatively activated macrophage
5
bipolar neuron
5
germinal matrix
5
iPS DF 19.11
5
luminal epithelial cell of mammary gland
5
lung microvascular endothelial cell
5
mammary epithelial cell
5
neural cell
5
osteoblast
5
subcutaneous abdominal adipose tissue
4
A172
4
ACC112
4
ACHN
4
C4-2B
4
CD1c-positive myeloid dendritic cell
4
CMK
4
Caki2
4
CyT49
4
DND-41
4
DOHH2
4
Daoy
4
EH
4
EL
4
ELF-1
4
ELR
4
G401
Life stage
4
embryonic
Date released
3
September, 2022
1
February, 2021
1
March, 2020
1
May, 2021
Software used
2
r
1
abc
1
chromhmm
1
encode-ccres
1
nospecificsoft_customcode
Lab
5
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
6
AMP
RFA
6
AMP
biosample_term_name!
muscle cell
organ_slims!
ureter
Showing 6 of 6 results
table-tab-icon
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Download
FileSet
DSR507CRE
released
Annotation file set
: Candidate regulatory elements for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR401CTI
released
Annotation file set
: Target gene predictions for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR387DPA
released
Annotation file set
: Chromatin states for BSS01263 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR832JXZ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE mesendoderm
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR932LQZ
released
Annotation file set
: enhancer-gene predicton of H1_BMP4_Derived_Mesendoderm_Cultured_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR579JEW
released
Annotation file set
: A target gene prediction annotation in Human Mesendoderm of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP