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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
5
accessible chromatin
4
chromatin state
4
target gene predictions
2
candidate regulatory elements
2
gene expression
1
binding sites
1
histone modifications
1
variant allelic effects
Annotation Category
6
cis-regulatory elements
Annotation type Category
6
ChIP-seq
2
DNase-seq
Available data
6
bed bed3+
File set status
6
released
Genome assembly (visualization)
6
hg19
Organism
6
Homo sapiens
Biosample type
6
in vitro differentiated cells
Biosample term
21
stomach
18
heart
17
lung
17
muscle of arm
15
kidney
15
large intestine
15
muscle of back
14
adrenal gland
14
common myeloid progenitor, CD34-positive
14
muscle of leg
14
small intestine
13
brain
13
left lung
12
placenta
11
CD4-positive, alpha-beta T cell
11
renal cortex interstitium
11
right lung
10
renal pelvis
10
right kidney
9
hematopoietic multipotent progenitor cell
9
left kidney
9
spleen
9
thymus
8
CD8-positive, alpha-beta T cell
8
liver
7
foreskin keratinocyte
7
mature neutrophil
7
spinal cord
6
B cell
6
H9
6
adipocyte
6
heart left ventricle
6
subcutaneous abdominal adipose tissue
5
CD14-positive, CD16-negative classical monocyte
5
CD4-positive, alpha-beta memory T cell
5
cardiac muscle cell
5
embryonic stem cell
5
endothelial cell of umbilical vein
5
foreskin fibroblast
5
sigmoid colon
4
CD14-positive monocyte
4
MCF-7
4
Peyer's patch
4
T-cell
4
WI38
4
alternatively activated macrophage
4
body of pancreas
4
chorionic villus
4
dermis blood vessel endothelial cell
4
esophagus squamous epithelium
4
fibroblast of lung
4
gastrocnemius medialis
4
gastroesophageal sphincter
4
layer of hippocampus
4
left renal cortex interstitium
4
left renal pelvis
4
lower leg skin
4
mammary epithelial cell
4
muscle of trunk
4
naive thymus-derived CD4-positive, alpha-beta T cell
4
neurosphere
4
ovary
4
pancreas
4
peripheral blood mononuclear cell
4
right renal pelvis
4
substantia nigra
4
temporal lobe
4
testis
4
thyroid gland
4
transverse colon
4
trophoblast cell
4
upper lobe of left lung
3
A549
3
MCF 10A
3
T-helper 1 cell
3
breast epithelium
3
cardiac fibroblast
3
caudate nucleus
3
cingulate gyrus
3
colonic mucosa
3
duodenal mucosa
3
endocrine pancreas
3
esophagus muscularis mucosa
3
foreskin melanocyte
3
heart right ventricle
3
inflammatory macrophage
3
islet of Langerhans
3
mesodermal cell
3
mucosa of rectum
3
natural killer cell
3
omental fat pad
3
parathyroid adenoma
3
psoas muscle
3
retina
3
right renal cortex interstitium
3
skeletal muscle myoblast
3
skeletal muscle tissue
3
stomach smooth muscle
3
subcutaneous adipose tissue
3
suprapubic skin
3
tibial nerve
22Rv1
2
AG10803
2
ESC derived cell line
2
GM12878
2
HEK293
2
HeLa-S3
2
HepG2
2
K562
2
LNCAP
2
NAMALWA
2
SK-N-DZ
2
SK-N-SH
2
T-helper 17 cell
2
T-helper 2 cell
2
angular gyrus
2
aorta
2
ascending aorta
2
bronchial epithelial cell
2
cardiac myoblast
2
cardiovascular progenitor cell
2
chorion
2
dermis microvascular lymphatic vessel endothelial cell
2
endodermal cell
2
epithelial cell of prostate
2
erythroblast
2
esophagus
2
eye
2
fibroblast of breast
2
keratinocyte
2
lung microvascular endothelial cell
2
mesenchymal stem cell
2
middle frontal area 46
2
muscle layer of colon
2
muscle layer of duodenum
2
myoepithelial cell of mammary gland
2
neural cell
2
neuroepithelial stem cell
2
neuronal stem cell
2
neutrophil
2
placental basal plate
2
prostate gland
2
regulatory T cell
2
thoracic aorta
2
tongue
2
trophoblast
2
uterus
2
vagina
1
A172
1
A673
1
ACC112
1
ACHN
1
AG04449
1
AG04450
1
AG09309
1
AG09319
1
Ammon's horn
1
BE2C
1
BJ
1
BL-2 cell
1
C4-2B
1
CD1c-positive myeloid dendritic cell
1
CD34-PB
1
CD34-negative, CD41-positive, CD42-positive megakaryocyte cell
1
CD4-positive, CD25-positive, alpha-beta regulatory T cell
1
CD8-positive, alpha-beta memory T cell
1
CMK
1
Caco-2
1
Caki2
1
D721Med
1
DG-75 cell
1
DND-41
1
DOHH2
1
Daoy
1
EH
1
EL
1
ELF-1
1
ELR
1
G401
1
GM04503
1
GM04504
1
GM06990
1
GM08714
1
GM10248
1
GM10266
1
GM12801
1
GM12864
1
GM12865
1
GM12873
1
GM12874
1
GM12875
1
GM13976
1
GM13977
1
GM20000
1
GM23248
1
GM23338
1
H1
1
H1-hESC
1
H4
1
H54
Organ
6
connective tissue
Life stage
1
adult
1
unknown
Date released
4
August, 2017
2
February, 2021
September, 2022
Software used
4
chromhmm
2
encode-ccres
Lab
4
Stephen Parker, UMich
2
AMP-T2D consortium
Project
6
AMP
RFA
6
AMP
assembly!
GRCh38
biosample_term_name!
22Rv1
month_released!
September, 2022
Showing 6 of 6 results
table-tab-icon
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Download
FileSet
DSR810TFD
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE adipocyte
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR462QHF
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE adipocyte
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
TSTSR644651
released
Annotation file set
: ChromHMM 13-state model for hASC-t4
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
TSTSR798156
released
Annotation file set
: ChromHMM 13-state model for hASC-t3
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
TSTSR104634
released
Annotation file set
: ChromHMM 13-state model for hASC-t2
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
TSTSR863340
released
Annotation file set
: ChromHMM 13-state model for hASC-t1
Lab:
Stephen Parker, UMich
Project:
AMP