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Schema
Citing CMDGA
Clear Filters
Annotation type
1
accessible chromatin
1
candidate regulatory elements
1
chromatin state
1
target gene predictions
Annotation Category
2
cis-regulatory elements
Annotation type Category
2
ChIP-seq
1
DNase-seq
Available data
1
bed bed3+
1
bed bed9
File set status
2
released
Genome assembly (visualization)
2
hg19
1
GRCh38
Organism
2
Homo sapiens
Biosample type
2
tissue
Biosample term
39
A549
30
common myeloid progenitor, CD34-positive
26
hematopoietic multipotent progenitor cell
18
adrenal gland
17
B cell
16
stomach
15
spleen
14
MCF-7
14
liver
13
K562
13
adipose tissue
12
body of pancreas
12
gastrocnemius medialis
12
sigmoid colon
12
thyroid gland
12
transverse colon
10
CD8-positive, alpha-beta memory T cell
10
Peyer's patch
10
mononuclear cell
10
tibial nerve
upper lobe of left lung
9
CD14-positive monocyte
9
endocrine pancreas
9
layer of hippocampus
9
natural killer cell
9
ovary
9
temporal lobe
8
CD4-positive, alpha-beta T cell
8
HeLa-S3
8
angular gyrus
8
aorta
8
caudate nucleus
8
esophagus squamous epithelium
8
heart left ventricle
8
lower leg skin
8
psoas muscle
7
ascending aorta
7
breast epithelium
7
esophagus muscularis mucosa
7
kidney
7
omental fat pad
7
pancreas
7
parathyroid adenoma
7
substantia nigra
7
thoracic aorta
6
CD4-positive, alpha-beta memory T cell
6
CD8-positive, alpha-beta T cell
6
T cell
6
T-helper 1 cell
6
cingulate gyrus
6
colonic mucosa
6
coronary artery
6
duodenal mucosa
6
endometrium adenocarcinoma
6
esophagus
6
fibroblast of breast
6
gastroesophageal sphincter
6
immortal human breast epithelial cell line cell
6
mucosa of rectum
6
muscle layer of colon
6
muscle layer of duodenum
6
myoepithelial cell of mammary gland
6
prostate gland
6
skeletal muscle tissue
6
small intestine
6
stomach smooth muscle
6
testis
6
tibial artery
6
vagina
5
LNCaP clone FGC
5
T-helper 2 cell
5
T47D
5
cerebellum
5
kidney tubule cell
5
mature neutrophil
5
regulatory T cell
5
right atrium auricular region
5
right cardiac atrium
5
subcutaneous abdominal adipose tissue
4
Brodmann (1909) area 46
4
GM12878
4
dermis blood vessel endothelial cell
4
fibroblast of lung
4
frontal cortex
4
lung
4
mammary gland epithelial cell
4
mesenchymal stem cell
4
muscle cell
4
naive T cell
4
peripheral blood mononuclear cell
4
skeletal muscle satellite cell
4
uterus
3
A172
3
ACC112
3
ACHN
3
Ammon's horn
3
C4-2B
3
Caki2
3
DOHH2
3
GM04503
3
GM04504
3
GM23248
3
GM23338
3
H4
3
H54
3
HAP-1
3
HCT116
3
HL-60
3
HS-27A
3
HS-5
3
HT-29
3
HT1080
3
KBM-7
3
KMS-11
3
LHCN-M2
3
Loucy
3
M059J
3
MCF 10A
3
MM.1S
3
NB4
3
NCI-H929
3
OCI-LY1
3
OCI-LY3
3
OCI-LY7
3
PC-3
3
RCC 7860
3
RPMI7951
3
RPMI8226
3
RWPE1
3
RWPE2
3
SJSA1
3
SK-MEL-5
3
SU-DHL-6
3
SW480
3
adipocyte
3
bipolar neuron
3
cerebellar cortex
3
fibroblast of dermis
3
globus pallidus
3
heart right ventricle
3
iPS-11a
3
iPS-15b
3
iPS-18a
3
iPS-18c
3
iPS-20b
3
inflammatory macrophage
3
kidney glomerular epithelial cell
3
middle frontal gyrus
3
mucosa of stomach
3
putamen
3
right lobe of liver
3
skeletal muscle myoblast
3
suprapubic skin
3
urinary bladder
2
8988T
2
AG08395 cell
2
AG08396 cell
2
AG09309 cell
2
AG09319 cell
2
AG10803
2
AG10803 cell
2
AG20443
2
CD14-positive, CD16-negative classical monocyte
2
COLO829
2
Caco-2 cell
2
GM10248
2
GM10266
2
GM12875
2
GM19238
2
GM19239
2
GM19240
2
HPDE6-E6E7
2
HuH-7
2
HuH-7.5
2
KARPAS-422 cell
2
LNCAP
2
LoVo cell
2
NCI-H226 cell
2
T-cell
2
VCaP cell
2
alternatively activated macrophage
2
fibroblast of cardiac tissue
2
heart
2
hepatic stellate cell
2
iPS-NIHi11
2
iPS-NIHi7
2
inferior parietal cortex
2
luminal epithelial cell of mammary gland
2
mammary epithelial cell
2
mammary stem cell
2
medulla oblongata
2
midbrain
2
middle frontal area 46
2
occipital lobe
2
olfactory neurosphere cell line
2
pons
2
rectum smooth muscle tissue
2
renal cell carcinoma
2
subcutaneous adipose tissue
2
superior temporal gyrus
Organ
2
heart
Life stage
52
embryonic
2
adult
2
child
1
fetal
1
young adult
Date released
2
September, 2022
Software used
1
chromhmm
1
r
Lab
2
AMP-T2D consortium
Project
2
AMP
RFA
2
AMP
biosample_term_name!
upper lobe of left lung
Showing 2 of 2 results
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Download
FileSet
DSR853SVT
released
Annotation file set
: Candidate regulatory elements for BSS00514 heart from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR821WIY
released
Annotation file set
: Chromatin states for BSS00514 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP