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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
3
target gene predictions
2
accessible chromatin
2
binding sites
2
candidate regulatory elements
2
chromatin state
2
histone modifications
Annotation Category
4
cis-regulatory elements
Annotation type Category
4
ChIP-seq
2
DNase-seq
Available data
2
bed bed3+
1
bed bed9
1
bed bed9+
File set status
4
released
Genome assembly (visualization)
4
hg19
1
GRCh38
Organism
4
Homo sapiens
Biosample type
4
primary cell
Biosample term
3
stromal cell of bone marrow
1
CD34-negative, CD41-positive, CD42-positive megakaryocyte cell
Organ
236
kidney
220
musculature of body
202
lung
183
brain
172
intestine
163
epithelium
144
limb
136
connective tissue
123
heart
110
skin of body
105
large intestine
92
extraembryonic component
86
vasculature
85
embryo
75
stomach
74
bodily fluid
68
blood
67
blood vessel
57
small intestine
45
placenta
44
ureter
43
mammary gland
42
adrenal gland
42
liver
41
pancreas
40
bone element
38
penis
34
prostate gland
31
thymus
29
adipose tissue
29
lymph node
27
eye
25
gonad
24
esophagus
24
spinal cord
21
spleen
18
artery
14
lymphoid tissue
13
testis
13
uterus
12
mouth
12
ovary
12
thyroid gland
11
vein
10
nerve
9
lymphatic vessel
7
breast
7
skeleton
6
bronchus
6
tongue
6
vagina
5
urinary bladder
4
bone marrow
nose
Life stage
3
unknown
1
child
Date released
2
September, 2022
1
February, 2021
1
May, 2022
Software used
2
chromhmm
1
encode-ccres
1
r
Lab
4
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
biosample_term_name!
prostate gland
organ_slims!
nose
Showing 4 of 4 results
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Download
FileSet
DSR748MDW
released
Annotation file set
: Candidate regulatory elements for BSS01661 stromal cell of bone marrow from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR315JBI
released
Annotation file set
: Chromatin states for BSS01661 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR180LXT
released
Annotation file set
: Chromatin state of CD34-negative, CD41-positive, CD42-positive megakaryocyte cell from BLUEPRINT ChromHmm Segmentation of ChIP-Seq data
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR880WUR
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE stromal cell of bone marrow
Lab:
AMP-T2D consortium
Project:
AMP