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Schema
Citing CMDGA
Clear Filters
Annotation type
4
binding sites
3
candidate regulatory elements
2
accessible chromatin
2
chromatin state
2
histone modifications
2
target gene predictions
Annotation Category
5
cis-regulatory elements
Annotation type Category
5
ChIP-seq
3
DNase-seq
Available data
3
bed bed3+
2
bed bed9
File set status
5
released
Genome assembly (visualization)
5
hg19
2
GRCh38
Organism
5
Homo sapiens
Biosample type
5
cell line
Biosample term
39
A549
14
K562
14
MCF-7
8
H9
8
HeLa-S3
6
22Rv1
6
SK-N-DZ
6
SK-N-SH
6
WI38
6
endometrium adenocarcinoma
6
immortal human breast epithelial cell line cell
5
LNCaP clone FGC
T47D
4
GM12878
4
HEK293
4
HepG2
4
NAMALWA cell
3
A172
3
A673
3
ACC112
3
ACHN
3
C4-2B
3
CMK
3
Caki2
3
DND-41
3
DOHH2
3
Daoy
3
EH
3
EL
3
ELF-1
3
ELR
3
G401
3
GM04503
3
GM04504
3
GM06990
3
GM08714
3
GM10248
3
GM10266
3
GM12864
3
GM12865
3
GM12875
3
GM23248
3
GM23338
3
H4
3
H54
3
HAP-1
3
HCT116
3
HL-60
3
HS-27A
3
HS-5
3
HT-29
3
HT1080
3
HUES48
3
HUES6
3
HUES64
3
IMR-90
3
KARPAS-422 cell
3
KBM-7
3
KMS-11
3
KOPT-K1
3
L1-S8
3
LHCN-M2
3
Loucy
3
M059J
3
MCF 10A
3
MG63
3
MM.1S
3
NB4
3
NCI-H929
3
OCI-LY1
3
OCI-LY3
3
OCI-LY7
3
PC-3
3
PC-9
3
Panc1
3
RCC 7860
3
RPMI7951
3
RPMI8226
3
RWPE1
3
RWPE2
3
SJCRH30
3
SJSA1
3
SK-MEL-5
3
SK-N-MC
3
SU-DHL-6
3
SW480
3
UCSF-4
3
WERI-Rb-1
3
iPS DF 19.11
3
iPS DF 19.7
3
iPS DF 6.9
3
iPS-11a
3
iPS-15b
3
iPS-18a
3
iPS-18c
3
iPS-20b
2
8988T
2
AG04449 cell
2
AG04450 cell
2
AG08395 cell
2
AG08396 cell
2
AG09309 cell
2
AG09319 cell
2
AG10803
2
AG10803 cell
2
AG20443
2
BE(2)-C
2
BJ cell
2
COLO829
2
CWRU1
2
Caco-2 cell
2
ES-I3
2
ESC derived cell line
2
GM03348
2
GM12891
2
GM12892
2
GM18507
2
GM19238
2
GM19239
2
GM19240
2
H1-hESC
2
H7-hESC
2
HEK293T
2
HK-2 cell
2
HPDE6-E6E7
2
HTR-8/Svneo
2
HuH-7
2
HuH-7.5
2
L1-S8R
2
LNCAP
2
LoVo cell
2
NAMALWA
2
NCI-H226 cell
2
NCI-H460 cell
2
NT2-D1 cell
2
VCaP cell
2
colon carcinoma
2
colon epithelial cell
2
foreskin fibroblast
2
iPS DF 4.7 Cell Line
2
iPS-NIHi11
2
iPS-NIHi7
2
lymphocyte
2
medulloblastoma
2
renal cell carcinoma
2
urothelium cell line
1
AG04449
1
AG04450
1
AG09309
1
AG09319
1
BE2C
1
BJ
1
BL-2 cell
1
Caco-2
1
D721Med
1
DG-75 cell
1
GM12801
1
GM12873
1
GM12874
1
GM13976
1
GM13977
1
GM20000
1
H1
1
H7
1
HCEC 1CT
1
HFF-Myc
1
HK-2
1
Ishikawa
1
JVM-2 cell
1
Jurkat, Clone E6-1
1
Karpas-422
1
LoVo
1
NCI-H226
1
NCI-H460
1
NT2/D1
1
RCC
1
RKO
1
SUDHL5
1
U-266 cell
1
VCaP
1
Z-138
1
iPS DF 4.7
Disease term
2
colorectal adenocarcinoma
2
retinoblastoma
Organ
3
eye
Life stage
2
adult
2
child
1
young adult
Date released
4
September, 2022
1
February, 2021
Software used
2
chromhmm
2
r
1
encode-ccres
Lab
5
AMP-T2D consortium
Project
5
AMP
RFA
5
AMP
biosample_term_name!
T47D
Showing 5 of 5 results
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Download
FileSet
DSR280FPC
released
Annotation file set
: Candidate regulatory elements for BSS01890 WERI-Rb-1 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR200CHJ
released
Annotation file set
: Candidate regulatory elements for BSS00159 Caco-2 cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR709UAF
released
Annotation file set
: Chromatin states for BSS01890 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR549QKL
released
Annotation file set
: Chromatin states for BSS00159 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR905YYG
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE WERI-Rb-1
Lab:
AMP-T2D consortium
Project:
AMP