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Schema
Citing CMDGA
Clear Filters
Annotation type
17
target gene predictions
3
binding sites
2
accessible chromatin
2
candidate regulatory elements
1
chromatin state
1
histone modifications
Annotation Category
3
cis-regulatory elements
Annotation type Category
3
ChIP-seq
2
DNase-seq
Available data
3
bed bed3+
File set status
3
released
Genome assembly (visualization)
3
hg19
Organism
3
Homo sapiens
Biosample type
3
cell line
Biosample term
21
stomach
20
heart
17
kidney
17
lung
17
muscle of arm
16
muscle of leg
15
brain
15
large intestine
15
muscle of back
14
adrenal gland
14
common myeloid progenitor, CD34-positive
14
small intestine
13
left lung
12
placenta
11
CD4-positive, alpha-beta T cell
11
renal cortex interstitium
11
right lung
10
renal pelvis
10
right kidney
9
B cell
9
heart left ventricle
9
hematopoietic multipotent progenitor cell
9
left kidney
9
spleen
9
thymus
8
CD8-positive, alpha-beta T cell
8
adipocyte
8
liver
7
endothelial cell of umbilical vein
7
foreskin keratinocyte
7
mature neutrophil
7
spinal cord
6
H9
6
left cardiac atrium
6
natural killer cell
6
subcutaneous abdominal adipose tissue
6
temporal lobe
5
CD14-positive, CD16-negative classical monocyte
5
CD4-positive, alpha-beta memory T cell
5
cardiac muscle cell
5
embryonic stem cell
5
foreskin fibroblast
5
heart right ventricle
5
sigmoid colon
4
CD14-positive monocyte
4
MCF-7
4
Peyer's patch
4
T-cell
4
WI38
4
alternatively activated macrophage
4
angular gyrus
4
aorta
4
body of pancreas
4
chorionic villus
4
dermis blood vessel endothelial cell
4
esophagus squamous epithelium
4
fibroblast of lung
4
gastrocnemius medialis
4
gastroesophageal sphincter
4
layer of hippocampus
4
left renal cortex interstitium
4
left renal pelvis
4
lower leg skin
4
mammary epithelial cell
4
muscle of trunk
4
naive thymus-derived CD4-positive, alpha-beta T cell
4
neuronal stem cell
4
neurosphere
4
ovary
4
pancreas
4
peripheral blood mononuclear cell
4
right renal pelvis
4
substantia nigra
4
testis
4
thyroid gland
4
tibial nerve
4
transverse colon
4
trophoblast cell
4
upper lobe of left lung
3
A549
3
MCF 10A
3
T-helper 1 cell
3
ascending aorta
3
breast epithelium
3
cardiac fibroblast
3
caudate nucleus
3
cingulate gyrus
3
colonic mucosa
3
duodenal mucosa
3
endocrine pancreas
3
endothelial cell
3
endothelial cell of lymphatic vessel
3
esophagus muscularis mucosa
3
fibroblast
3
foreskin melanocyte
3
inflammatory macrophage
3
islet of Langerhans
3
macrophage
3
mast cell
3
mesenchymal stem cell
3
mesodermal cell
3
mucosa of rectum
3
omental fat pad
3
parathyroid adenoma
3
psoas muscle
3
retina
3
right cardiac atrium
3
right renal cortex interstitium
3
skeletal muscle myoblast
3
skeletal muscle tissue
3
smooth muscle cell
3
stomach smooth muscle
3
subcutaneous adipose tissue
3
suprapubic skin
3
thoracic aorta
2
22Rv1
2
AG10803
2
ESC derived cell line
2
GM12878
2
HEK293
2
HeLa-S3
2
HepG2
2
K562
2
LNCAP
2
NAMALWA
2
SK-N-DZ
2
SK-N-SH
2
T-helper 17 cell
2
T-helper 2 cell
2
bronchial epithelial cell
2
cardiac myoblast
2
cardiovascular progenitor cell
2
chorion
2
coronary artery
2
dermis microvascular lymphatic vessel endothelial cell
2
endocardial cell
2
endodermal cell
2
epithelial cell of prostate
2
erythroblast
2
esophagus
2
eye
2
fibroblast of breast
2
germinal matrix
2
hepatocyte
2
keratinocyte
2
lung microvascular endothelial cell
2
middle frontal area 46
2
muscle layer of colon
2
muscle layer of duodenum
2
myoepithelial cell of mammary gland
2
neural cell
2
neuroepithelial stem cell
2
neutrophil
2
pericyte cell
2
placental basal plate
2
prostate gland
2
regular ventricular cardiac myocyte
2
regulatory T cell
2
skeletal muscle satellite cell
2
tibial artery
2
tongue
2
trophoblast
2
uterus
2
vagina
1
A172
1
A673
1
ACC112
1
ACHN
1
AG04449
1
AG04450
1
AG09309
1
AG09319
1
Ammon's horn
1
BE2C
1
BJ
1
BL-2 cell
1
C4-2B
1
CD1c-positive myeloid dendritic cell
1
CD34-PB
1
CD34-negative, CD41-positive, CD42-positive megakaryocyte cell
1
CD4-positive, CD25-positive, alpha-beta regulatory T cell
1
CD8-positive, alpha-beta memory T cell
1
CMK
1
Caco-2
1
Caki2
1
D721Med
1
DG-75 cell
1
DND-41
1
DOHH2
1
Daoy
1
EH
1
EL
1
ELF-1
1
ELR
1
G401
1
GM04503
1
GM04504
1
GM06990
1
GM08714
1
GM10248
Organ
2
blood
2
bodily fluid
1
lymph node
Life stage
1
adult
1
unknown
Date released
September, 2022
2
February, 2021
1
August, 2017
Software used
2
encode-ccres
1
chromhmm
Lab
2
AMP-T2D consortium
1
Stephen Parker, UMich
Project
3
AMP
RFA
3
AMP
month_released!
September, 2022
Showing 3 of 3 results
table-tab-icon
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Download
FileSet
DSR396CCK
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE K562
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR185GQK
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE GM10266
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
TSTSR418295
released
Annotation file set
: ChromHMM 13-state model for for human K562
Lab:
Stephen Parker, UMich
Project:
AMP