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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
7
target gene predictions
5
chromatin state
2
binding sites
1
accessible chromatin
1
candidate regulatory elements
1
histone modifications
Annotation Category
6
cis-regulatory elements
Annotation type Category
6
ChIP-seq
1
DNase-seq
Available data
4
bed bed9
2
bed bed3+
File set status
6
released
Genome assembly (visualization)
6
hg19
4
GRCh38
Organism
6
Homo sapiens
Biosample type
3
cell line
3
primary cell
Biosample term
40
stomach
39
heart
33
lung
33
muscle of arm
31
brain
31
kidney
29
muscle of leg
29
small intestine
28
adrenal gland
28
muscle of back
27
common myeloid progenitor, CD34-positive
27
large intestine
26
left lung
26
placenta
22
right lung
21
A549
20
renal cortex interstitium
20
right kidney
20
thymus
19
hematopoietic multipotent progenitor cell
19
renal pelvis
18
left kidney
17
B cell
15
liver
15
spleen
14
CD4-positive, alpha-beta memory T cell
14
heart left ventricle
14
spinal cord
11
CD4-positive, alpha-beta T cell
11
foreskin keratinocyte
10
adipocyte
10
sigmoid colon
9
MCF-7
9
endothelial cell of umbilical vein
9
natural killer cell
9
trophoblast cell
8
CD14-positive monocyte
8
CD8-positive, alpha-beta T cell
8
CD8-positive, alpha-beta memory T cell
8
K562
8
body of pancreas
8
chorionic villus
8
gastrocnemius medialis
8
heart right ventricle
8
muscle of trunk
8
ovary
8
temporal lobe
8
thyroid gland
8
transverse colon
7
H9
7
Peyer's patch
7
adipose tissue
7
endocrine pancreas
7
fibroblast of lung
7
foreskin fibroblast
7
layer of hippocampus
7
left cardiac atrium
7
mature neutrophil
7
mononuclear cell
7
neurosphere
7
psoas muscle
7
testis
7
tibial nerve
7
upper lobe of left lung
6
T-helper 1 cell
6
angular gyrus
6
aorta
6
cardiac muscle cell
6
caudate nucleus
6
dermis blood vessel endothelial cell
6
esophagus squamous epithelium
6
left renal cortex interstitium
6
left renal pelvis
6
lower leg skin
6
pancreas
6
retina
6
right renal pelvis
6
skeletal muscle tissue
6
subcutaneous abdominal adipose tissue
6
substantia nigra
5
CD14-positive, CD16-negative classical monocyte
5
HeLa-S3
5
T-helper 17 cell
5
T-helper 2 cell
5
WI38
5
ascending aorta
5
breast epithelium
5
cingulate gyrus
5
colonic mucosa
5
duodenal mucosa
5
embryonic stem cell
5
esophagus muscularis mucosa
5
gastroesophageal sphincter
5
mesenchymal stem cell
5
mucosa of rectum
5
neural progenitor cell
5
omental fat pad
5
parathyroid adenoma
5
regulatory T cell
5
right renal cortex interstitium
5
skeletal muscle myoblast
5
stomach smooth muscle
5
thoracic aorta
4
22Rv1
4
SK-N-DZ
4
SK-N-SH
4
T cell
4
T-cell
4
alternatively activated macrophage
4
bronchial epithelial cell
4
coronary artery
4
endodermal cell
4
epithelial cell of prostate
4
esophagus
4
eye
4
fibroblast of breast
4
fibroblast of dermis
4
foreskin melanocyte
4
hepatocyte
4
keratinocyte
4
mammary epithelial cell
4
mesodermal cell
4
muscle layer of colon
4
muscle layer of duodenum
4
myoepithelial cell of mammary gland
4
naive thymus-derived CD4-positive, alpha-beta T cell
4
neuronal stem cell
4
neutrophil
4
peripheral blood mononuclear cell
4
prostate gland
4
right cardiac atrium
4
smooth muscle cell
4
tibial artery
4
tongue
4
trophoblast
4
vagina
3
GM12878
3
HEK293
3
HepG2
3
LNCaP clone FGC
3
MCF 10A
3
T47D
3
cardiac fibroblast
3
cerebellum
3
chorion membrane
3
endometrium adenocarcinoma
3
endothelial cell
3
endothelial cell of lymphatic vessel
3
fibroblast
3
fibroblast of cardiac tissue
3
germinal matrix
3
immortal human breast epithelial cell line cell
3
inflammatory macrophage
3
islet of Langerhans
3
kidney tubule cell
3
limb
3
lung microvascular endothelial cell
3
macrophage
3
mammary gland epithelial cell
3
mast cell
3
naive T cell
3
neural cell
3
pericyte cell
3
right atrium auricular region
3
skeletal muscle satellite cell
3
subcutaneous adipose tissue
3
suprapubic skin
3
urinary bladder
3
uterus
2
A172
2
A673
2
ACC112
2
ACHN
2
AG10803
2
Ammon's horn
2
Brodmann (1909) area 46
2
C4-2B
2
CD1c-positive myeloid dendritic cell
2
CMK
2
Caki2
2
DND-41
2
DOHH2
2
Daoy
2
EH
2
EL
2
ELF-1
2
ELR
2
ESC derived cell line
2
G401
2
GM04503
2
GM04504
2
GM06990
2
GM08714
2
GM10248
2
GM10266
2
GM12864
2
GM12865
2
GM12875
2
GM23248
2
GM23338
Organ
3
blood
3
bodily fluid
Life stage
5
adult
1
unknown
Date released
4
September, 2022
1
August, 2017
1
February, 2021
Software used
5
chromhmm
r
1
encode-ccres
Lab
5
AMP-T2D consortium
1
Stephen Parker, UMich
Project
6
AMP
RFA
6
AMP
software_used.software.name!
r
Showing 6 of 6 results
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Download
FileSet
DSR665OQJ
released
Annotation file set
: Chromatin states for BSS00439 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR869MJX
released
Annotation file set
: Chromatin states for BSS01348 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR162KRU
released
Annotation file set
: Chromatin states for BSS01347 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR439SQN
released
Annotation file set
: Chromatin states for BSS01346 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR589MOX
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE GM12878
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
TSTSR588101
released
Annotation file set
: ChromHMM 13-state model for GM12878
Lab:
Stephen Parker, UMich
Project:
AMP