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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
1
chromatin state
1
target gene predictions
Annotation Category
3
cis-regulatory elements
Annotation type Category
3
ChIP-seq
2
DNase-seq
Available data
2
bed bed3+
1
bed bed9
File set status
3
released
Genome assembly (visualization)
3
hg19
1
GRCh38
Organism
3
Homo sapiens
Biosample type
3
cell line
Biosample term
59
stomach
58
heart
49
lung
49
muscle of arm
47
brain
45
kidney
44
small intestine
42
adrenal gland
42
muscle of leg
41
muscle of back
40
common myeloid progenitor, CD34-positive
40
large intestine
40
placenta
39
A549
39
left lung
33
right lung
31
thymus
30
right kidney
29
hematopoietic multipotent progenitor cell
29
renal cortex interstitium
28
renal pelvis
27
left kidney
25
B cell
23
CD4-positive, alpha-beta memory T cell
22
liver
21
spinal cord
21
spleen
19
heart left ventricle
15
CD8-positive, alpha-beta memory T cell
15
foreskin keratinocyte
15
sigmoid colon
14
K562
14
MCF-7
14
trophoblast cell
13
adipose tissue
13
mononuclear cell
12
CD14-positive monocyte
12
adipocyte
12
body of pancreas
12
chorionic villus
12
gastrocnemius medialis
12
muscle of trunk
12
natural killer cell
12
ovary
12
thyroid gland
12
transverse colon
11
CD4-positive, alpha-beta T cell
11
endocrine pancreas
11
endothelial cell of umbilical vein
11
heart right ventricle
11
psoas muscle
10
Peyer's patch
10
fibroblast of lung
10
layer of hippocampus
10
neurosphere
10
temporal lobe
10
testis
10
tibial nerve
10
upper lobe of left lung
9
T-helper 1 cell
9
caudate nucleus
9
foreskin fibroblast
9
neural progenitor cell
9
retina
9
skeletal muscle tissue
8
CD8-positive, alpha-beta T cell
8
H9
8
HeLa-S3
8
T cell
8
T-helper 17 cell
8
T-helper 2 cell
8
angular gyrus
8
aorta
8
dermis blood vessel endothelial cell
8
esophagus squamous epithelium
8
left cardiac atrium
8
left renal cortex interstitium
8
left renal pelvis
8
lower leg skin
8
pancreas
8
regulatory T cell
8
right renal pelvis
8
substantia nigra
7
ascending aorta
7
breast epithelium
7
cardiac muscle cell
7
cingulate gyrus
7
colonic mucosa
7
duodenal mucosa
7
esophagus muscularis mucosa
7
fibroblast of dermis
7
mature neutrophil
7
mesenchymal stem cell
7
mucosa of rectum
7
omental fat pad
7
parathyroid adenoma
7
right renal cortex interstitium
7
skeletal muscle myoblast
7
stomach smooth muscle
7
thoracic aorta
6
22Rv1
6
SK-N-DZ
6
SK-N-SH
6
WI38
6
bronchial epithelial cell
6
chorion membrane
6
coronary artery
6
endodermal cell
6
endometrium adenocarcinoma
6
epithelial cell of prostate
6
esophagus
6
eye
6
fibroblast of breast
6
fibroblast of cardiac tissue
6
gastroesophageal sphincter
6
hepatocyte
6
immortal human breast epithelial cell line cell
6
keratinocyte
6
mammary gland epithelial cell
6
muscle layer of colon
6
muscle layer of duodenum
6
myoepithelial cell of mammary gland
6
naive T cell
neutrophil
6
prostate gland
6
subcutaneous abdominal adipose tissue
6
tibial artery
6
tongue
6
trophoblast
6
vagina
5
CD14-positive, CD16-negative classical monocyte
5
LNCaP clone FGC
5
T47D
5
cerebellum
5
embryonic stem cell
5
foreskin melanocyte
5
kidney tubule cell
5
limb
5
mesodermal cell
5
right atrium auricular region
5
right cardiac atrium
5
smooth muscle cell
5
urinary bladder
4
Brodmann (1909) area 46
4
GM12878
4
HEK293
4
HepG2
4
NAMALWA cell
4
T-cell
4
alternatively activated macrophage
4
dermis lymphatic vessel endothelial cell
4
frontal cortex
4
germinal matrix
4
lung microvascular endothelial cell
4
mammary epithelial cell
4
muscle cell
4
naive thymus-derived CD4-positive, alpha-beta T cell
4
neural cell
4
neuronal stem cell
4
pericyte cell
4
peripheral blood mononuclear cell
4
skeletal muscle satellite cell
4
skin fibroblast
4
uterus
3
A172
3
A673
3
ACC112
3
ACHN
3
Ammon's horn
3
C4-2B
3
CD1c-positive myeloid dendritic cell
3
CMK
3
Caki2
3
DND-41
3
DOHH2
3
Daoy
3
EH
3
EL
3
ELF-1
3
ELR
3
G401
3
GM04503
3
GM04504
3
GM06990
3
GM08714
3
GM10248
3
GM10266
3
GM12864
3
GM12865
3
GM12875
3
GM23248
3
GM23338
3
H1-hESC
3
H4
3
H54
3
HAP-1
3
HCT116
3
HL-60
3
HS-27A
3
HS-5
Life stage
3
adult
Date released
2
September, 2022
1
February, 2021
Software used
1
chromhmm
1
encode-ccres
1
r
Lab
3
AMP-T2D consortium
Project
3
AMP
RFA
3
AMP
biosample_term_name!
neutrophil
Showing 3 of 3 results
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Download
FileSet
DSR045XGF
released
Annotation file set
: Candidate regulatory elements for BSS00477 GM23338 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR251NYF
released
Annotation file set
: Chromatin states for BSS00477 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR736AOM
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE GM23338
Lab:
AMP-T2D consortium
Project:
AMP