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Schema
Citing CMDGA
Clear Filters
Annotation type
39
target gene predictions
8
gene expression
2
binding sites
2
chromatin state
1
accessible chromatin
1
candidate regulatory elements
1
histone modifications
Annotation Category
3
cis-regulatory elements
Annotation type Category
3
ChIP-seq
1
DNase-seq
Available data
2
bed bed3+
1
bed bed9
File set status
3
released
Genome assembly (visualization)
3
hg19
1
GRCh38
Organism
3
Homo sapiens
Biosample type
tissue
2
cell line
1
stem cell
Biosample term
40
common myeloid progenitor, CD34-positive
39
A549
29
hematopoietic multipotent progenitor cell
23
CD4-positive, alpha-beta memory T cell
22
B cell
15
CD8-positive, alpha-beta memory T cell
15
foreskin keratinocyte
14
K562
14
MCF-7
14
trophoblast cell
13
mononuclear cell
12
CD14-positive monocyte
11
CD4-positive, alpha-beta T cell
11
endothelial cell of umbilical vein
10
adipocyte
10
fibroblast of lung
10
neurosphere
9
T-helper 1 cell
9
foreskin fibroblast
9
natural killer cell
9
neural progenitor cell
8
CD8-positive, alpha-beta T cell
8
H9
8
HeLa-S3
8
T cell
8
T-helper 17 cell
8
T-helper 2 cell
8
dermis blood vessel endothelial cell
8
regulatory T cell
7
cardiac muscle cell
7
fibroblast of dermis
7
mature neutrophil
7
mesenchymal stem cell
7
skeletal muscle myoblast
6
22Rv1
6
SK-N-DZ
6
SK-N-SH
6
WI38
6
bronchial epithelial cell
6
endodermal cell
6
endometrium adenocarcinoma
6
epithelial cell of prostate
6
fibroblast of breast
6
fibroblast of cardiac tissue
6
immortal human breast epithelial cell line cell
6
keratinocyte
6
mammary gland epithelial cell
6
myoepithelial cell of mammary gland
6
naive T cell
6
neutrophil
5
CD14-positive, CD16-negative classical monocyte
5
LNCaP clone FGC
5
T47D
5
embryonic stem cell
5
foreskin melanocyte
5
hepatocyte
5
kidney tubule cell
5
mesodermal cell
4
GM12878
4
HEK293
4
HepG2
4
NAMALWA cell
4
T-cell
4
alternatively activated macrophage
4
dermis lymphatic vessel endothelial cell
4
lung microvascular endothelial cell
4
mammary epithelial cell
4
muscle cell
4
naive thymus-derived CD4-positive, alpha-beta T cell
4
neural cell
4
peripheral blood mononuclear cell
4
skeletal muscle satellite cell
4
skin fibroblast
3
A172
3
A673
3
ACC112
3
ACHN
3
C4-2B
3
CD1c-positive myeloid dendritic cell
3
CMK
3
Caki2
3
DND-41
3
DOHH2
3
Daoy
3
EH
3
EL
3
ELF-1
3
ELR
3
G401
3
GM04503
3
GM04504
3
GM06990
3
GM08714
3
GM10248
3
GM10266
3
GM12864
3
GM12865
3
GM12875
3
GM23248
3
GM23338
3
H1-hESC
3
H4
3
H54
3
HAP-1
3
HCT116
3
HL-60
3
HS-27A
3
HS-5
3
HT-29
3
HT1080
3
HUES48
3
HUES6
3
HUES64
3
IMR-90
3
KARPAS-422 cell
3
KBM-7
3
KMS-11
3
KOPT-K1
3
L1-S8
3
LHCN-M2
3
Loucy
3
M059J
3
MCF 10A
3
MG63
3
MM.1S
3
NB4
3
NCI-H929
3
OCI-LY1
3
OCI-LY3
3
OCI-LY7
3
PC-3
3
PC-9
3
Panc1
3
RCC 7860
3
RPMI7951
3
RPMI8226
3
RWPE1
3
RWPE2
3
SJCRH30
3
SJSA1
3
SK-MEL-5
3
SK-N-MC
3
SU-DHL-6
3
SW480
3
UCSF-4
3
WERI-Rb-1
3
astrocyte
3
astrocyte of the cerebellum
3
astrocyte of the hippocampus
3
astrocyte of the spinal cord
3
bipolar neuron
3
brain microvascular endothelial cell
3
cardiac fibroblast
3
choroid plexus epithelial cell
3
ectodermal cell
3
epithelial cell of esophagus
3
epithelial cell of proximal tubule
3
fibroblast of gingiva
3
fibroblast of mammary gland
3
fibroblast of peridontal ligament
3
fibroblast of pulmonary artery
3
fibroblast of the aortic adventitia
3
fibroblast of the conjunctiva
3
fibroblast of villous mesenchyme
3
glomerular endothelial cell
3
glomerular visceral epithelial cell
3
iPS DF 19.11
3
iPS DF 19.7
3
iPS DF 6.9
3
iPS-11a
3
iPS-15b
3
iPS-18a
3
iPS-18c
3
iPS-20b
3
inflammatory macrophage
3
iris pigment epithelial cell
3
islet precursor cell
3
kidney epithelial cell
3
kidney glomerular epithelial cell
3
mesendoderm
3
neuron
3
non-pigmented ciliary epithelial cell
3
osteoblast
3
pulmonary artery endothelial cell
3
renal cortical epithelial cell
3
retinal pigment epithelial cell
3
skeletal muscle cell
3
smooth muscle cell
3
smooth muscle cell of the brain vasculature
3
stromal cell of bone marrow
2
8988T
2
AG04449 cell
2
AG04450 cell
2
AG08395 cell
2
AG08396 cell
2
AG09309 cell
2
AG09319 cell
2
AG10803
2
AG10803 cell
2
AG20443
Organ
3
embryo
Life stage
3
embryonic
Date released
2
September, 2022
1
August, 2017
Software used
2
chromhmm
1
r
Lab
2
AMP-T2D consortium
1
Stephen Parker, UMich
Project
3
AMP
RFA
3
AMP
biosample_type!
tissue
month_released!
January, 2021
Showing 3 of 3 results
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Download
FileSet
DSR702NFK
released
Annotation file set
: Candidate regulatory elements for BSS00478 H1-hESC from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR002BRL
released
Annotation file set
: Chromatin states for BSS00478 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
TSTSR642714
released
Annotation file set
: ChromHMM 13-state model for H1
Lab:
Stephen Parker, UMich
Project:
AMP