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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
3
candidate regulatory elements
2
chromatin state
2
target gene predictions
Annotation Category
5
cis-regulatory elements
Annotation type Category
5
ChIP-seq
3
DNase-seq
Available data
3
bed bed3+
2
bed bed9
File set status
5
released
Genome assembly (visualization)
5
hg19
2
GRCh38
Organism
5
Homo sapiens
Biosample type
3
in vitro differentiated cells
2
primary cell
Biosample term
17
CD4-positive, alpha-beta memory T cell
10
common myeloid progenitor, CD34-positive
8
T-helper 17 cell
6
22Rv1
6
WI38
6
bronchial epithelial cell
6
epithelial cell of prostate
6
neutrophil
5
B cell
5
CD8-positive, alpha-beta memory T cell
5
fibroblast of lung
5
keratinocyte
4
dermis lymphatic vessel endothelial cell
4
fibroblast of dermis
4
lung microvascular endothelial cell
3
CD14-positive monocyte
3
CD1c-positive myeloid dendritic cell
3
CD4-positive, alpha-beta T cell
3
GM06990
3
GM12864
3
GM12865
3
KOPT-K1
3
L1-S8
3
PC-9
3
Panc1
3
T-helper 1 cell
3
T-helper 2 cell
3
adipocyte
3
astrocyte
3
astrocyte of the cerebellum
3
astrocyte of the hippocampus
3
astrocyte of the spinal cord
3
brain microvascular endothelial cell
3
choroid plexus epithelial cell
3
epithelial cell of esophagus
3
epithelial cell of proximal tubule
3
fibroblast of gingiva
3
fibroblast of mammary gland
3
fibroblast of peridontal ligament
3
fibroblast of pulmonary artery
3
fibroblast of the aortic adventitia
3
fibroblast of the conjunctiva
3
fibroblast of villous mesenchyme
3
glomerular endothelial cell
3
hematopoietic multipotent progenitor cell
3
iris pigment epithelial cell
3
kidney epithelial cell
3
mononuclear cell
3
naive thymus-derived CD4-positive, alpha-beta T cell
3
non-pigmented ciliary epithelial cell
3
osteoblast
3
pulmonary artery endothelial cell
3
regulatory T cell
3
renal cortical epithelial cell
3
retinal pigment epithelial cell
3
skeletal muscle cell
3
skeletal muscle myoblast
3
skeletal muscle tissue
3
smooth muscle cell of the brain vasculature
3
stromal cell of bone marrow
2
CWRU1
2
GM12891
2
GM12892
2
HK-2 cell
2
L1-S8R
2
NCI-H460 cell
2
NT2-D1 cell
2
T cell
2
T-cell
2
cardiac muscle cell
2
chorion membrane
2
colon carcinoma
2
colon epithelial cell
2
dermis microvascular lymphatic vessel endothelial cell
2
endocrine pancreas
2
epidermal melanocyte
2
epithelial cell of amnion
2
fibroblast of cardiac tissue
2
germinal center
2
hepatocyte
2
mammary gland epithelial cell
2
naive T cell
2
pericyte cell
2
regular cardiac myocyte
1
BL-2 cell
1
CD4-positive, CD25-positive, alpha-beta regulatory T cell
1
CD8-positive, alpha-beta T cell
1
DG-75 cell
1
GM08714
1
GM10248
1
GM10266
1
GM12801
1
GM12873
1
GM12874
1
GM12875
1
GM13976
1
GM13977
1
HCEC 1CT
1
HK-2
1
JVM-2 cell
1
KARPAS-422 cell
1
NCI-H460
1
NT2/D1
1
RKO
1
SUDHL5
1
U-266 cell
1
Z-138
1
amniotic epithelial cell
1
brain pericyte
1
cardiac fibroblast
1
effector memory CD4-positive, alpha-beta T cell
1
mammary epithelial cell
1
myotube
Organ
3
connective tissue
2
epithelium
2
liver
Life stage
6
adult
5
unknown
3
embryonic
Date released
4
September, 2022
1
February, 2021
Software used
2
chromhmm
2
r
1
encode-ccres
Lab
5
AMP-T2D consortium
Project
5
AMP
RFA
5
AMP
Showing 5 of 5 results
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Download
FileSet
DSR654OFJ
released
Annotation file set
: Candidate regulatory elements for BSS00554 hepatocyte from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR854ZLT
released
Annotation file set
: Candidate regulatory elements for BSS00038 adipocyte from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR607QDA
released
Annotation file set
: Chromatin states for BSS00554 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR379DHG
released
Annotation file set
: Chromatin states for BSS00038 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR810TFD
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE adipocyte
Lab:
AMP-T2D consortium
Project:
AMP