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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
2
target gene predictions
1
chromatin state
Annotation Category
3
cis-regulatory elements
Annotation type Category
3
ChIP-seq
2
DNase-seq
Available data
2
bed bed3+
1
bed bed9
File set status
3
released
Genome assembly (visualization)
3
hg19
1
GRCh38
Organism
3
Homo sapiens
Biosample type
3
cell line
Biosample term
40
common myeloid progenitor, CD34-positive
39
A549
29
hematopoietic multipotent progenitor cell
23
CD4-positive, alpha-beta memory T cell
22
B cell
19
stomach
18
adrenal gland
18
spleen
17
liver
15
CD8-positive, alpha-beta memory T cell
15
foreskin keratinocyte
15
sigmoid colon
14
K562
14
MCF-7
13
adipose tissue
13
heart left ventricle
13
mononuclear cell
12
CD14-positive monocyte
12
body of pancreas
12
gastrocnemius medialis
12
thyroid gland
12
transverse colon
11
CD4-positive, alpha-beta T cell
11
endocrine pancreas
11
endothelial cell of umbilical vein
11
psoas muscle
10
Peyer's patch
10
adipocyte
10
fibroblast of lung
10
layer of hippocampus
10
temporal lobe
10
tibial nerve
10
upper lobe of left lung
9
T-helper 1 cell
9
caudate nucleus
9
foreskin fibroblast
9
natural killer cell
9
ovary
9
skeletal muscle tissue
9
small intestine
8
CD8-positive, alpha-beta T cell
8
HeLa-S3
8
T cell
8
T-helper 17 cell
8
T-helper 2 cell
8
angular gyrus
8
aorta
8
dermis blood vessel endothelial cell
8
esophagus squamous epithelium
8
heart right ventricle
8
lower leg skin
8
pancreas
8
regulatory T cell
8
substantia nigra
7
ascending aorta
7
breast epithelium
7
cingulate gyrus
7
colonic mucosa
7
duodenal mucosa
7
esophagus muscularis mucosa
7
fibroblast of dermis
7
kidney
7
lung
7
mature neutrophil
7
mucosa of rectum
7
omental fat pad
7
parathyroid adenoma
7
skeletal muscle myoblast
7
stomach smooth muscle
7
thoracic aorta
6
22Rv1
6
SK-N-DZ
6
SK-N-SH
6
WI38
6
bronchial epithelial cell
6
coronary artery
6
endometrium adenocarcinoma
6
epithelial cell of prostate
6
esophagus
6
fibroblast of breast
6
gastroesophageal sphincter
6
heart
6
immortal human breast epithelial cell line cell
6
keratinocyte
6
mammary gland epithelial cell
6
muscle layer of colon
6
muscle layer of duodenum
6
myoepithelial cell of mammary gland
6
naive T cell
6
neutrophil
6
prostate gland
6
subcutaneous abdominal adipose tissue
6
testis
6
tibial artery
6
vagina
5
CD14-positive, CD16-negative classical monocyte
5
LNCaP clone FGC
5
T47D
5
cerebellum
5
embryonic stem cell
5
foreskin melanocyte
5
kidney tubule cell
5
left cardiac atrium
5
right atrium auricular region
5
right cardiac atrium
4
Brodmann (1909) area 46
4
GM12878
4
HepG2
4
NAMALWA cell
4
T-cell
alternatively activated macrophage
4
dermis lymphatic vessel endothelial cell
4
fibroblast of cardiac tissue
4
frontal cortex
4
lung microvascular endothelial cell
4
mammary epithelial cell
4
mesenchymal stem cell
4
muscle cell
4
naive thymus-derived CD4-positive, alpha-beta T cell
4
peripheral blood mononuclear cell
4
skeletal muscle satellite cell
4
uterus
3
A172
3
A673
3
ACC112
3
ACHN
3
Ammon's horn
3
C4-2B
3
CD1c-positive myeloid dendritic cell
3
CMK
3
Caki2
3
DND-41
3
DOHH2
3
Daoy
3
EH
3
EL
3
ELR
3
G401
3
GM04503
3
GM04504
3
GM06990
3
GM08714
3
GM10248
3
GM10266
3
GM12864
3
GM12865
3
GM12875
3
GM23248
3
GM23338
3
H4
3
H54
3
HAP-1
3
HCT116
3
HL-60
3
HS-27A
3
HS-5
3
HT-29
3
HT1080
3
KARPAS-422 cell
3
KBM-7
3
KMS-11
3
KOPT-K1
3
L1-S8
3
LHCN-M2
3
Loucy
3
M059J
3
MCF 10A
3
MG63
3
MM.1S
3
NB4
3
NCI-H929
3
OCI-LY1
3
OCI-LY3
3
OCI-LY7
3
PC-3
3
PC-9
3
Panc1
3
RCC 7860
3
RPMI7951
3
RPMI8226
3
RWPE1
3
RWPE2
3
SJCRH30
3
SJSA1
3
SK-MEL-5
3
SK-N-MC
3
SU-DHL-6
3
SW480
3
WERI-Rb-1
3
astrocyte
3
astrocyte of the cerebellum
3
astrocyte of the hippocampus
3
astrocyte of the spinal cord
3
bipolar neuron
3
brain microvascular endothelial cell
3
cerebellar cortex
3
choroid plexus epithelial cell
3
epithelial cell of esophagus
3
epithelial cell of proximal tubule
3
fibroblast of gingiva
Disease term
2
pancreatic ductal adenocarcinoma
Organ
3
pancreas
Life stage
3
unknown
Date released
2
September, 2022
1
February, 2021
Software used
1
chromhmm
1
encode-ccres
1
r
Lab
3
AMP-T2D consortium
Project
3
AMP
RFA
3
AMP
biosample_term_name!
alternatively activated macrophage
relevant_life_stage!
embryonic
Showing 3 of 3 results
table-tab-icon
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Download
FileSet
DSR623CCG
released
Annotation file set
: Candidate regulatory elements for BSS01405 Panc1 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR991ZNU
released
Annotation file set
: Chromatin states for BSS01405 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR014CHT
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE Panc1
Lab:
AMP-T2D consortium
Project:
AMP