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Schema
Citing CMDGA
Clear Filters
Annotation type
13
gene expression
8
accessible chromatin
4
histone modifications
4
target gene predictions
3
candidate regulatory elements
2
chromatin state
2
variant allelic effects
1
binding sites
Annotation Category
5
cis-regulatory elements
Annotation type Category
5
ChIP-seq
3
DNase-seq
Available data
3
bed bed3+
2
bed bed9
File set status
5
released
Genome assembly (visualization)
5
hg19
2
GRCh38
Organism
5
Homo sapiens
Biosample type
3
in vitro differentiated cells
2
primary cell
Biosample term
15
foreskin keratinocyte
11
endothelial cell of umbilical vein
8
dermis blood vessel endothelial cell
8
esophagus squamous epithelium
7
breast epithelium
6
bronchial epithelial cell
6
epithelial cell of prostate
6
keratinocyte
6
mammary gland epithelial cell
6
myoepithelial cell of mammary gland
5
hepatocyte
5
kidney tubule cell
4
dermis lymphatic vessel endothelial cell
4
lung microvascular endothelial cell
4
mammary epithelial cell
3
brain microvascular endothelial cell
3
choroid plexus epithelial cell
3
epithelial cell of esophagus
3
epithelial cell of proximal tubule
3
glomerular endothelial cell
3
glomerular visceral epithelial cell
3
iris pigment epithelial cell
3
kidney epithelial cell
3
kidney glomerular epithelial cell
3
non-pigmented ciliary epithelial cell
3
pulmonary artery endothelial cell
3
renal cortical epithelial cell
3
retinal pigment epithelial cell
2
colon epithelial cell
2
dermis microvascular lymphatic vessel endothelial cell
2
epidermal melanocyte
2
epithelial cell of amnion
2
kidney capillary endothelial cell
2
luminal epithelial cell of mammary gland
1
amniotic epithelial cell
Organ
5
epithelium
5
liver
Life stage
3
embryonic
2
unknown
Date released
4
September, 2022
1
February, 2021
Software used
2
chromhmm
2
r
1
encode-ccres
Lab
5
AMP-T2D consortium
Project
5
AMP
RFA
5
AMP
month_released!
May, 2022
organ_slims!
spleen
Showing 5 of 5 results
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Download
FileSet
DSR201DTC
released
Annotation file set
: Candidate regulatory elements for BSS00556 hepatocyte from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR654OFJ
released
Annotation file set
: Candidate regulatory elements for BSS00554 hepatocyte from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR642PKA
released
Annotation file set
: Chromatin states for BSS00556 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR607QDA
released
Annotation file set
: Chromatin states for BSS00554 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR731RPD
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE hepatocyte
Lab:
AMP-T2D consortium
Project:
AMP