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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
5
accessible chromatin
2
candidate regulatory elements
2
eQTL
2
gene expression
2
target gene predictions
1
binding sites
1
chromatin state
1
histone modifications
Annotation Category
3
cis-regulatory elements
Annotation type Category
3
ChIP-seq
2
DNase-seq
Available data
2
bed bed3+
1
bed bed9
File set status
3
released
Genome assembly (visualization)
3
hg19
1
GRCh38
Organism
3
Homo sapiens
Biosample type
3
primary cell
Biosample term
56
heart
49
muscle of arm
47
brain
45
lung
43
stomach
42
muscle of leg
41
muscle of back
40
large intestine
40
placenta
39
left lung
38
kidney
38
small intestine
33
right lung
31
thymus
30
right kidney
29
renal cortex interstitium
28
renal pelvis
27
left kidney
24
adrenal gland
21
spinal cord
17
CD4-positive, alpha-beta memory T cell
15
foreskin keratinocyte
14
trophoblast cell
12
chorionic villus
12
muscle of trunk
11
endothelial cell of umbilical vein
11
heart left ventricle
10
common myeloid progenitor, CD34-positive
10
neurosphere
9
foreskin fibroblast
9
neural progenitor cell
9
retina
8
H9
8
T-helper 17 cell
8
heart right ventricle
8
left cardiac atrium
8
left renal cortex interstitium
8
left renal pelvis
8
liver
8
right renal pelvis
7
adipocyte
7
cardiac muscle cell
7
right renal cortex interstitium
6
22Rv1
6
SK-N-DZ
6
SK-N-SH
6
WI38
6
bronchial epithelial cell
6
chorion membrane
6
endodermal cell
6
epithelial cell of prostate
6
eye
6
fibroblast of lung
6
keratinocyte
6
neutrophil
6
spleen
6
tongue
6
trophoblast
5
B cell
5
CD8-positive, alpha-beta memory T cell
5
embryonic stem cell
5
foreskin melanocyte
5
hepatocyte
5
limb
5
mesodermal cell
4
HEK293
4
HepG2
4
NAMALWA cell
4
dermis blood vessel endothelial cell
4
dermis lymphatic vessel endothelial cell
4
fibroblast of cardiac tissue
4
fibroblast of dermis
4
germinal matrix
4
lung microvascular endothelial cell
4
neural cell
4
skeletal muscle myoblast
4
skin fibroblast
4
testis
3
A673
3
CD14-positive monocyte
3
CD14-positive, CD16-negative classical monocyte
3
CD1c-positive myeloid dendritic cell
3
CD4-positive, alpha-beta T cell
3
CMK
3
DND-41
3
Daoy
3
EH
3
EL
3
ELF-1
3
ELR
3
G401
3
GM06990
3
GM08714
3
GM12864
3
GM12865
3
H1-hESC
3
HUES48
3
HUES6
3
HUES64
3
IMR-90
3
KOPT-K1
3
L1-S8
3
MG63
3
PC-9
3
Panc1
3
SJCRH30
3
SK-N-MC
3
T-helper 1 cell
3
T-helper 2 cell
3
UCSF-4
3
WERI-Rb-1
3
amnion
3
astrocyte
3
astrocyte of the cerebellum
3
astrocyte of the hippocampus
3
astrocyte of the spinal cord
3
brain microvascular endothelial cell
3
choroid plexus epithelial cell
3
ectodermal cell
3
epithelial cell of esophagus
3
epithelial cell of proximal tubule
3
femur
3
fibroblast of gingiva
3
fibroblast of mammary gland
3
fibroblast of peridontal ligament
3
fibroblast of pulmonary artery
3
fibroblast of the aortic adventitia
3
fibroblast of the conjunctiva
3
fibroblast of villous mesenchyme
3
glomerular endothelial cell
3
glomerular visceral epithelial cell
3
hematopoietic multipotent progenitor cell
3
iPS DF 19.11
3
iPS DF 19.7
3
iPS DF 6.9
3
iris pigment epithelial cell
3
islet of Langerhans
3
islet precursor cell
3
kidney epithelial cell
3
mesenchymal stem cell
3
mesendoderm
3
mononuclear cell
3
naive thymus-derived CD4-positive, alpha-beta T cell
3
neuron
3
non-pigmented ciliary epithelial cell
3
osteoblast
3
ovary
3
psoas muscle
3
pulmonary artery endothelial cell
3
regulatory T cell
3
renal cortical epithelial cell
3
retinal pigment epithelial cell
3
sigmoid colon
3
skeletal muscle cell
3
skeletal muscle tissue
3
smooth muscle cell
3
smooth muscle cell of the brain vasculature
3
stromal cell of bone marrow
3
umbilical cord
2
AG04449 cell
2
AG04450 cell
2
BE(2)-C
2
BJ cell
2
CD8-positive, alpha-beta T cell
2
CWRU1
2
ES-I3
2
ESC derived cell line
2
GM03348
2
GM12891
2
GM12892
2
GM18507
2
H7-hESC
2
HEK293T
2
HK-2 cell
2
HTR-8/Svneo
2
L1-S8R
2
NAMALWA
2
NCI-H460 cell
2
NT2-D1 cell
2
T cell
2
T-cell
2
alternatively activated macrophage
2
amnion mesenchymal stem cell
2
amniotic stem cell
2
arm bone
2
cardiac fibroblast
2
cardiac mesoderm primordium
2
cardiac myoblast
2
cardiovascular progenitor cell
2
chorion
2
colon carcinoma
2
colon epithelial cell
2
dermis microvascular lymphatic vessel endothelial cell
2
embryonic facial prominence
2
endocrine pancreas
2
epidermal melanocyte
2
epithelial cell of amnion
2
erythroblast
2
germinal center
2
iPS DF 4.7 Cell Line
Life stage
adult
3
unknown
Date released
2
September, 2022
1
February, 2021
Software used
1
chromhmm
1
encode-ccres
1
r
Lab
3
AMP-T2D consortium
Project
3
AMP
RFA
3
AMP
relevant_life_stage!
adult
Showing 3 of 3 results
table-tab-icon
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Download
FileSet
DSR051DPN
released
Annotation file set
: Candidate regulatory elements for BSS01480 regulatory T cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR099XMA
released
Annotation file set
: Chromatin states for BSS01480 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR321EWU
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE regulatory T cell
Lab:
AMP-T2D consortium
Project:
AMP