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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
3
chromatin state
3
histone modifications
2
accessible chromatin
2
candidate regulatory elements
2
eQTL
1
binding sites
1
gene expression
1
target gene predictions
1
variant allelic effects
Annotation Category
2
Genetic variant effects
2
cis-regulatory elements
Annotation type Category
2
ChIP-seq
2
DNase-seq
2
RNA-seq
Available data
2
bed bed3+
File set status
4
released
Genome assembly (visualization)
2
GRCh38
2
hg19
Organism
4
Homo sapiens
Biosample type
2
cell line
2
tissue
Biosample term
27
common myeloid progenitor, CD34-positive
21
A549
19
hematopoietic multipotent progenitor cell
17
liver
14
B cell
14
CD4-positive, alpha-beta memory T cell
14
spleen
14
stomach
13
adrenal gland
13
islet of Langerhans
11
adipose tissue
11
foreskin keratinocyte
10
sigmoid colon
9
MCF-7
9
body of pancreas
9
thyroid gland
9
transverse colon
8
CD14-positive monocyte
8
CD4-positive, alpha-beta T cell
8
CD8-positive, alpha-beta memory T cell
8
gastrocnemius medialis
8
heart left ventricle
8
skeletal muscle tissue
8
subcutaneous adipose tissue
8
substantia nigra
8
tibial nerve
7
CD8-positive, alpha-beta T cell
7
K562
7
Peyer's patch
7
T-helper 1 cell
7
caudate nucleus
7
endocrine pancreas
7
foreskin fibroblast
7
layer of hippocampus
7
macrophage
7
mononuclear cell
7
natural killer cell
7
omental fat pad
7
ovary
7
psoas muscle
7
regulatory T cell
7
small intestine
7
upper lobe of left lung
6
T cell
6
T-helper 17 cell
6
T-helper 2 cell
dermis blood vessel endothelial cell
6
endothelial cell of umbilical vein
6
esophagus muscularis mucosa
6
esophagus squamous epithelium
6
fibroblast of lung
6
lower leg skin
6
lung
6
lymphoblastoid cell line
6
naive thymus-derived CD4-positive, alpha-beta T cell
6
neutrophil
6
pancreas
5
HeLa-S3
5
WI38
5
ascending aorta
5
breast epithelium
5
cerebellum
5
coronary artery
5
esophagus
5
gastroesophageal sphincter
5
kidney
5
parathyroid adenoma
5
prostate gland
5
putamen
5
right atrium auricular region
5
subcutaneous abdominal adipose tissue
5
temporal lobe
5
testis
5
tibial artery
5
vagina
4
22Rv1
4
SK-N-DZ
4
SK-N-SH
4
T-cell
4
adipocyte
4
angular gyrus
4
aorta
4
bronchial epithelial cell
4
cingulate gyrus
4
colonic mucosa
4
duodenal mucosa
4
epithelial cell of prostate
4
fibroblast of breast
4
fibroblast of dermis
4
foreskin melanocyte
4
frontal cortex
4
heart right ventricle
4
monocyte
4
mucosa of rectum
4
muscle layer of colon
4
muscle layer of duodenum
4
myoepithelial cell of mammary gland
4
peripheral blood mononuclear cell
4
skeletal muscle myoblast
4
stomach smooth muscle
4
thoracic aorta
4
uterus
3
Ammon's horn
3
LNCaP clone FGC
3
MCF 10A
3
T47D
3
blood cell
3
endometrium adenocarcinoma
3
heart
3
immortal human breast epithelial cell line cell
3
keratinocyte
3
kidney tubule cell
3
lung microvascular endothelial cell
3
mammary epithelial cell
3
mammary gland epithelial cell
3
mesenchymal stem cell
3
naive T cell
3
right lobe of liver
3
skin of body
3
suprapubic skin
2
A172
2
A673
2
ACC112
2
ACHN
2
AG10803
2
Brodmann (1909) area 46
2
C4-2B
2
CD1c-positive myeloid dendritic cell
2
CMK
2
Caki2
2
DND-41
2
DOHH2
2
Daoy
2
EH
2
EL
2
ELR
2
G401
2
GM04503
2
GM04504
2
GM06990
2
GM08714
2
GM10248
2
GM10266
2
GM12864
2
GM12865
2
GM12875
2
GM12878
2
GM23248
2
GM23338
2
H4
2
H54
2
HAP-1
2
HCT116
2
HL-60
2
HS-27A
2
HS-5
2
HT-29
2
HT1080
2
HepG2
2
KBM-7
2
KMS-11
2
KOPT-K1
2
L1-S8
2
LHCN-M2
2
LNCAP
2
Loucy
2
M059J
2
MG63
2
MM.1S
2
NAMALWA
2
NAMALWA cell
2
NB4
2
NCI-H929
2
OCI-LY1
2
OCI-LY3
2
OCI-LY7
2
PC-3
2
PC-9
2
Panc1
2
RCC 7860
2
RPMI7951
2
RPMI8226
2
RWPE1
2
RWPE2
2
SJCRH30
2
SJSA1
2
SK-MEL-5
2
SK-N-MC
2
SU-DHL-6
2
SW480
2
WERI-Rb-1
2
amygdala
2
anterior cingulate cortex
2
articular chondrocyte
2
astrocyte
2
astrocyte of the cerebellum
2
astrocyte of the hippocampus
2
astrocyte of the spinal cord
2
bipolar neuron
2
blood
Organ
2
brain
2
kidney
Life stage
embryonic
1
child
1
young adult
Date released
2
January, 2022
1
February, 2021
1
September, 2022
Software used
2
qTLtools
1
encode-ccres
1
r
Lab
4
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
biosample_term_name!
dermis blood vessel endothelial cell
relevant_life_stage!
embryonic
Showing 4 of 4 results
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Download
FileSet
DSR225JEJ
released
Annotation file set
: Candidate regulatory elements for BSS00372 G401 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR191XXQ
released
Annotation file set
: brain naive eQTL of studay ROSMAP from eQTL Catalogue
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR999BSN
released
Annotation file set
: brain eQTL of studay BrainSeq from eQTL Catalogue
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR093VBX
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE G401
Lab:
AMP-T2D consortium
Project:
AMP