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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
16
histone modifications
11
accessible chromatin
8
gene expression
4
binding sites
3
Fine-mapped variants
3
candidate regulatory elements
1
chromatin state
1
eQTL
1
target gene predictions
1
variant allelic effects
Annotation Category
3
cis-regulatory elements
1
Genetic variant effects
Annotation type Category
3
ChIP-seq
3
DNase-seq
1
RNA-seq
Available data
3
bed bed3+
1
tsv
File set status
4
released
Genome assembly (visualization)
4
hg19
1
GRCh38
Organism
4
Homo sapiens
Biosample type
3
tissue
1
in vitro differentiated cells
Biosample term
22
stomach
18
heart
18
lung
17
muscle of arm
16
kidney
15
adrenal gland
15
brain
15
large intestine
15
muscle of back
15
small intestine
14
common myeloid progenitor, CD34-positive
14
muscle of leg
13
islet of Langerhans
13
left lung
13
liver
13
placenta
11
renal cortex interstitium
11
right lung
10
renal pelvis
10
right kidney
10
spleen
9
hematopoietic multipotent progenitor cell
9
left kidney
9
thymus
8
CD4-positive, alpha-beta T cell
8
spinal cord
8
subcutaneous adipose tissue
7
CD8-positive, alpha-beta T cell
7
foreskin keratinocyte
7
heart left ventricle
7
macrophage
6
B cell
6
H9
6
lymphoblastoid cell line
6
naive thymus-derived CD4-positive, alpha-beta T cell
6
substantia nigra
5
CD4-positive, alpha-beta memory T cell
5
adipose tissue
5
body of pancreas
5
cardiac muscle cell
5
foreskin fibroblast
5
omental fat pad
5
ovary
5
sigmoid colon
5
skeletal muscle tissue
5
subcutaneous abdominal adipose tissue
5
testis
5
thyroid gland
5
tibial nerve
5
transverse colon
4
CD14-positive monocyte
4
MCF-7
4
Peyer's patch
4
T-cell
4
T-helper 1 cell
4
WI38
4
caudate nucleus
4
chorionic villus
4
dermis blood vessel endothelial cell
4
endothelial cell of umbilical vein
4
esophagus muscularis mucosa
4
esophagus squamous epithelium
4
gastrocnemius medialis
4
gastroesophageal sphincter
4
layer of hippocampus
4
left renal cortex interstitium
4
left renal pelvis
4
lower leg skin
4
monocyte
4
muscle of trunk
4
natural killer cell
4
neurosphere
4
neutrophil
4
pancreas
4
peripheral blood mononuclear cell
4
putamen
4
regulatory T cell
4
retina
4
right renal pelvis
4
trophoblast cell
4
upper lobe of left lung
3
A549
3
MCF 10A
3
T-helper 17 cell
3
T-helper 2 cell
3
ascending aorta
3
blood cell
3
breast epithelium
3
cardiac fibroblast
3
cerebellum
3
coronary artery
3
endocrine pancreas
3
esophagus
3
fibroblast of lung
3
foreskin melanocyte
3
heart right ventricle
3
mammary epithelial cell
3
mesenchymal stem cell
3
mesodermal cell
3
parathyroid adenoma
3
prostate gland
3
psoas muscle
3
right atrium auricular region
right renal cortex interstitium
3
skin of body
3
suprapubic skin
3
temporal lobe
3
tibial artery
3
uterus
3
vagina
2
22Rv1
2
AG10803
2
Ammon's horn
2
HEK293
2
HeLa-S3
2
LNCAP
2
NAMALWA
2
SK-N-DZ
2
SK-N-SH
2
T cell
2
adipocyte
2
amygdala
2
angular gyrus
2
anterior cingulate cortex
2
aorta
2
articular chondrocyte
2
blood
2
bronchial epithelial cell
2
cardiac myoblast
2
cardiovascular progenitor cell
2
cartilage tissue
2
chorion
2
cingulate gyrus
2
colonic mucosa
2
dermis microvascular lymphatic vessel endothelial cell
2
duodenal mucosa
2
endodermal cell
2
epithelial cell of prostate
2
eye
2
fibroblast
2
fibroblast of breast
2
frontal cortex
2
hypothalamus
2
iPSC derived cell line
2
lung microvascular endothelial cell
2
middle frontal area 46
2
mucosa of rectum
2
muscle
2
muscle layer of colon
2
muscle layer of duodenum
2
myoepithelial cell of mammary gland
2
neural cell
2
neuroepithelial stem cell
2
neuronal stem cell
2
nucleus accumbens
2
placental basal plate
2
right lobe of liver
2
skeletal muscle myoblast
2
smooth muscle cell
2
stomach smooth muscle
2
thoracic aorta
2
tongue
2
trophoblast
1
A172
1
A673
1
ACC112
1
ACHN
1
AG04449
1
AG04450
1
AG09309
1
AG09319
1
BE2C
1
BJ
1
C1 segment of cervical spinal cord
1
C4-2B
1
CD1c-positive myeloid dendritic cell
1
CD4-positive, CD25-positive, alpha-beta regulatory T cell
1
CD8-positive, alpha-beta memory T cell
1
CMK
1
Caco-2
1
Caki2
1
D721Med
1
DND-41
1
DOHH2
1
Daoy
1
EH
1
EL
1
ELF-1
1
ELR
1
G401
1
GM04503
1
GM04504
1
GM06990
1
GM08714
1
GM10248
1
GM10266
1
GM12801
1
GM12864
1
GM12865
1
GM12873
Organ
3
blood vessel
3
vasculature
Life stage
3
adult
1
embryonic
Date released
September, 2022
3
February, 2021
1
February, 2020
Software used
3
encode-ccres
1
gtex_eqtl:V8
Lab
4
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
biosample_term_name!
right renal cortex interstitium
month_released!
September, 2022
Showing 4 of 4 results
table-tab-icon
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Download
FileSet
DSR859OBP
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE neural progenitor cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR229UIC
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE ascending aorta
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR562VOB
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE ascending aorta
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR511FNT
released
Annotation file set
: eQTL of ascending aorta for GTEx V8
Lab:
AMP-T2D consortium
Project:
AMP