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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
86
histone modifications
18
accessible chromatin
15
gene expression
4
eQTL
2
hQTL
2
target gene predictions
1
binding sites
1
meQTL
1
sQTL
0
candidate regulatory elements
Annotation Category
4
Genetic variant effects
Annotation type Category
4
RNA-seq
File set status
4
released
Genome assembly (visualization)
3
GRCh38
1
hg19
Organism
4
Homo sapiens
Biosample type
41
tissue
4
primary cell
Biosample term
27
common myeloid progenitor, CD34-positive
14
B cell
14
CD4-positive, alpha-beta memory T cell
11
foreskin keratinocyte
8
CD14-positive monocyte
8
CD4-positive, alpha-beta T cell
8
CD8-positive, alpha-beta memory T cell
7
CD8-positive, alpha-beta T cell
7
T-helper 1 cell
7
macrophage
7
mononuclear cell
7
natural killer cell
7
neurosphere
7
regulatory T cell
trophoblast cell
6
T cell
6
T-helper 17 cell
6
T-helper 2 cell
6
dermis blood vessel endothelial cell
6
endothelial cell of umbilical vein
6
fibroblast of lung
6
foreskin fibroblast
6
naive thymus-derived CD4-positive, alpha-beta T cell
6
neutrophil
4
T-cell
4
bronchial epithelial cell
4
epithelial cell of prostate
4
fibroblast of breast
4
fibroblast of dermis
4
foreskin melanocyte
4
monocyte
4
myoepithelial cell of mammary gland
4
peripheral blood mononuclear cell
4
skeletal muscle myoblast
3
blood cell
3
cardiac fibroblast
3
fibroblast of cardiac tissue
3
keratinocyte
3
kidney tubule cell
3
lung microvascular endothelial cell
3
mammary epithelial cell
3
mammary gland epithelial cell
3
naive T cell
2
CD1c-positive myeloid dendritic cell
2
articular chondrocyte
2
astrocyte
2
astrocyte of the cerebellum
2
astrocyte of the hippocampus
2
astrocyte of the spinal cord
2
brain microvascular endothelial cell
2
cardiac muscle cell
2
choroid plexus epithelial cell
2
dermis lymphatic vessel endothelial cell
2
dermis microvascular lymphatic vessel endothelial cell
2
epithelial cell of esophagus
2
epithelial cell of proximal tubule
2
fibroblast
2
fibroblast of gingiva
2
fibroblast of mammary gland
2
fibroblast of peridontal ligament
2
fibroblast of pulmonary artery
2
fibroblast of the aortic adventitia
2
fibroblast of the conjunctiva
2
fibroblast of villous mesenchyme
2
glomerular endothelial cell
2
glomerular visceral epithelial cell
2
iris pigment epithelial cell
2
kidney epithelial cell
2
kidney glomerular epithelial cell
2
mesenchymal stem cell
2
non-pigmented ciliary epithelial cell
2
osteoblast
2
pulmonary artery endothelial cell
2
renal cortical epithelial cell
2
retinal pigment epithelial cell
2
skeletal muscle cell
2
skeletal muscle satellite cell
2
skin fibroblast
2
smooth muscle cell of the brain vasculature
2
stromal cell of bone marrow
1
CD4-positive, CD25-positive, alpha-beta regulatory T cell
1
Leydig cell
1
T follicular helper cell
1
activated CD4-positive, alpha-beta T cell
1
activated CD8-positive, alpha-beta T cell
1
amnion mesenchymal stem cell
1
amniotic epithelial cell
1
amniotic stem cell
1
brain pericyte
1
effector memory CD4-positive, alpha-beta T cell
1
endothelial cell
1
epidermal melanocyte
1
epithelial cell of amnion
1
fat cell
1
fibroblast of skin of abdomen
1
fibroblast of skin of back
1
fibroblast of skin of right quadriceps
1
helper T cell
1
hepatic stellate cell
1
hepatocyte
1
kidney capillary endothelial cell
1
luminal epithelial cell of mammary gland
1
mammary stem cell
1
microglial cell
1
naive B cel
1
naive thymus-derived CD8-positive, alpha-beta T cell
1
pericyte cell
1
progenitor cell
1
regular cardiac myocyte
1
sensory neuron
1
smooth muscle cell
1
type I muscle cell
1
type II muscle cell
Life stage
1
adult
Date released
3
January, 2022
1
May, 2021
Software used
3
qTLtools
1
limix
Lab
4
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
biosample_term_name!
trophoblast cell
Showing 4 of 4 results
table-tab-icon
matrix-icon
FileSet
DSR338LAI
released
Annotation file set
: monocyte naive eQTL of studay Schmiedel_2018 from eQTL Catalogue
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR085HYL
released
Annotation file set
: monocyte CD16 naive eQTL of studay Schmiedel_2018 from eQTL Catalogue
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR583OYR
released
Annotation file set
: monocyte eQTL of studay BLUEPRINT from eQTL Catalogue
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR693IVW
released
Annotation file set
: expression quantitative trait loci (eQTLs) from RNA-seq of BLUEPRINT epigenome project of human immune cell types (CD14+ monocytes) from up to 197 individuals.
Lab:
AMP-T2D consortium
Project:
AMP