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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
23
accessible chromatin
3
candidate regulatory elements
1
binding sites
1
eQTL
1
gene expression
1
histone modifications
1
variant allelic effects
Annotation Category
3
cis-regulatory elements
1
Genetic variant effects
Annotation type Category
3
ChIP-seq
3
DNase-seq
1
RNA-seq
Available data
3
bed bed3+
1
tsv
File set status
4
released
Genome assembly (visualization)
3
hg19
1
GRCh38
Organism
4
Homo sapiens
Biosample type
4
tissue
Biosample term
22
stomach
18
heart
18
lung
17
muscle of arm
16
kidney
15
adrenal gland
15
brain
15
large intestine
15
muscle of back
15
small intestine
14
common myeloid progenitor, CD34-positive
14
muscle of leg
13
islet of Langerhans
13
left lung
13
liver
13
placenta
11
renal cortex interstitium
11
right lung
10
macrophage
10
renal pelvis
10
right kidney
10
spleen
9
B cell
9
hematopoietic multipotent progenitor cell
9
left kidney
9
thymus
8
CD4-positive, alpha-beta T cell
8
spinal cord
8
subcutaneous adipose tissue
7
CD8-positive, alpha-beta T cell
7
foreskin keratinocyte
7
heart left ventricle
7
natural killer cell
6
H9
6
lymphoblastoid cell line
6
naive thymus-derived CD4-positive, alpha-beta T cell
6
substantia nigra
5
CD4-positive, alpha-beta memory T cell
5
adipose tissue
5
body of pancreas
5
cardiac muscle cell
5
fibroblast
5
foreskin fibroblast
5
omental fat pad
5
sigmoid colon
5
skeletal muscle tissue
5
subcutaneous abdominal adipose tissue
5
testis
5
thyroid gland
5
tibial nerve
5
transverse colon
4
CD14-positive monocyte
4
MCF-7
4
Peyer's patch
4
T-cell
4
T-helper 1 cell
4
WI38
4
adipocyte
4
caudate nucleus
4
chorionic villus
4
dermis blood vessel endothelial cell
4
endothelial cell
4
endothelial cell of umbilical vein
4
esophagus muscularis mucosa
4
esophagus squamous epithelium
4
gastrocnemius medialis
4
gastroesophageal sphincter
4
layer of hippocampus
4
left renal cortex interstitium
4
left renal pelvis
4
lower leg skin
4
monocyte
4
muscle of trunk
4
neuronal stem cell
4
neurosphere
4
neutrophil
4
pancreas
4
peripheral blood mononuclear cell
4
putamen
4
regulatory T cell
4
retina
4
right renal pelvis
4
smooth muscle cell
4
trophoblast cell
4
upper lobe of left lung
3
A549
3
MCF 10A
3
T-helper 17 cell
3
T-helper 2 cell
3
ascending aorta
3
blood cell
3
breast epithelium
3
cardiac fibroblast
3
cerebellum
3
coronary artery
3
endocrine pancreas
3
endothelial cell of lymphatic vessel
3
esophagus
3
fibroblast of lung
3
foreskin melanocyte
3
heart right ventricle
3
mammary epithelial cell
3
mast cell
3
mesenchymal stem cell
3
mesodermal cell
3
parathyroid adenoma
3
prostate gland
3
psoas muscle
3
right atrium auricular region
3
right renal cortex interstitium
3
skin of body
3
suprapubic skin
3
temporal lobe
3
tibial artery
3
uterus
3
vagina
2
22Rv1
2
AG10803
2
Ammon's horn
2
HEK293
2
HeLa-S3
2
LNCAP
2
NAMALWA
2
SK-N-DZ
2
SK-N-SH
2
T cell
2
amygdala
2
angular gyrus
2
anterior cingulate cortex
2
aorta
2
articular chondrocyte
2
blood
2
bronchial epithelial cell
2
cardiac myoblast
2
cardiovascular progenitor cell
2
cartilage tissue
2
chorion
2
cingulate gyrus
2
colonic mucosa
2
dermis microvascular lymphatic vessel endothelial cell
2
duodenal mucosa
2
endocardial cell
2
endodermal cell
2
epithelial cell of prostate
2
eye
2
fibroblast of breast
2
frontal cortex
2
hepatocyte
2
hypothalamus
2
iPSC derived cell line
2
lung microvascular endothelial cell
2
middle frontal area 46
2
mucosa of rectum
2
muscle
2
muscle layer of colon
2
muscle layer of duodenum
2
myoepithelial cell of mammary gland
2
neural cell
2
neuroepithelial stem cell
2
nucleus accumbens
2
pericyte cell
2
placental basal plate
2
regular ventricular cardiac myocyte
2
right lobe of liver
2
skeletal muscle myoblast
2
stomach smooth muscle
2
thoracic aorta
2
tongue
2
trophoblast
1
A172
1
A673
1
ACC112
1
ACHN
1
AG04449
1
AG04450
1
AG09309
1
AG09319
1
BE2C
1
BJ
1
C1 segment of cervical spinal cord
1
C4-2B
1
CD1c-positive myeloid dendritic cell
1
CD4-positive, CD25-positive, alpha-beta regulatory T cell
1
CD8-positive, alpha-beta memory T cell
1
CMK
1
Caco-2
1
Caki2
1
D721Med
1
DND-41
1
DOHH2
1
Daoy
1
EH
1
EL
1
ELF-1
1
ELR
1
G401
1
GM04503
1
GM04504
1
GM06990
1
GM08714
Organ
4
eye
Life stage
3
embryonic
1
adult
Date released
3
February, 2021
September, 2022
1
February, 2020
Software used
3
encode-ccres
1
qTLtools
Lab
4
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
month_released!
September, 2022
organ_slims!
ovary
Showing 4 of 4 results
table-tab-icon
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Download
FileSet
DSR805SQD
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE retina
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR302SKE
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE retina
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR701XVJ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE retina
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR010VOR
released
Annotation file set
: cis-eQTL of eye from EyeGEx
Lab:
AMP-T2D consortium
Project:
AMP