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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
9
accessible chromatin
7
target gene predictions
2
candidate regulatory elements
2
gene expression
2
variant allelic effects
1
caQTL
1
chromatin state
1
eQTL
Annotation Category
2
Gene expression levels
2
Genetic variant effects
2
cis-regulatory elements
Annotation type Category
2
ChIP-seq
2
DNase-seq
2
snATAC-seq
1
RNA-seq
1
snRNA-seq
Available data
4
bed bed3+
1
tsv
File set status
6
released
Genome assembly (visualization)
5
hg19
Organism
6
Homo sapiens
Biosample type
3
in vitro differentiated cells
3
primary cell
Biosample term
42
heart
41
stomach
37
kidney
34
lung
34
muscle of arm
31
brain
29
adrenal gland
29
small intestine
28
muscle of back
27
common myeloid progenitor, CD34-positive
27
large intestine
27
muscle of leg
26
left lung
26
placenta
22
right lung
21
A549
21
renal cortex interstitium
21
right kidney
20
hematopoietic multipotent progenitor cell
20
renal pelvis
20
thymus
19
epithelial cell of proximal tubule
18
hepatocyte
18
left kidney
17
glomerular endothelial cell
16
B cell
16
spleen
15
monocyte
14
CD4-positive, alpha-beta memory T cell
14
heart left ventricle
14
liver
14
spinal cord
13
T-helper 1 cell
12
T-helper 17 cell
12
endothelial cell
12
islet of Langerhans
12
neural progenitor cell
12
regulatory T cell
11
adipose tissue
11
body of pancreas
11
cardiomyocytes
11
foreskin keratinocyte
10
CD8-positive, alpha-beta T cell
10
sigmoid colon
10
tibial nerve
9
EndoC_BH1
9
H1-hESC
9
MCF-7
9
extended pluripotent stem (EPS) cells
9
induced pluripotent stem cell
9
ovary
9
progenitor cell of endocrine pancreas
9
trophoblast cell
8
CD14-positive monocyte
8
CD4-positive, alpha-beta T cell
8
CD8-positive, alpha-beta memory T cell
8
T-helper 2 cell
8
cardiac muscle cell
8
chorionic villus
8
gastrocnemius medialis
8
glomerular visceral epithelial cell
8
heart right ventricle
8
muscle of trunk
8
natural killer cell
8
retina
8
subcutaneous adipose tissue
8
testis
8
thyroid gland
8
transverse colon
7
H9
7
K562
7
Peyer's patch
7
adipocyte
7
caudate nucleus
7
endocrine pancreas
7
endothelial cell of umbilical vein
7
foreskin fibroblast
7
kidney loop of Henle thin ascending limb epithelial cell
7
left renal cortex interstitium
7
left renal pelvis
7
mononuclear cell
7
neurosphere
7
omental fat pad
7
pancreatic ductal cell
7
psoas muscle
7
right atrium auricular region
7
right renal pelvis
7
skeletal muscle tissue
7
upper lobe of left lung
6
T cell
6
ascending aorta
6
coronary artery
6
dermis blood vessel endothelial cell
6
esophagus squamous epithelium
6
fibroblast
6
fibroblast of lung
6
kidney interstitial cell
6
layer of hippocampus
6
lower leg skin
6
pancreas
6
right renal cortex interstitium
6
skeletal muscle myoblast
6
smooth muscle cell
6
substantia nigra
6
temporal lobe
6
tibial artery
5
HeLa-S3
5
WI38
5
aorta
5
breast epithelium
5
cardiac precursors (cardiac muscle cell)
5
cardiomyocytes (cardiac muscle cell)
5
cerebellum
5
esophagus muscularis mucosa
5
frontal cortex
5
gastroesophageal sphincter
5
kidney cortex collecting duct principal cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
macrophage
5
mesangial cell
5
mesenchymal stem cell
5
naive thymus-derived CD4-positive, alpha-beta T cell
5
parathyroid adenoma
5
subcutaneous abdominal adipose tissue
5
thoracic aorta
5
vagina
4
22Rv1
4
SK-N-DZ
4
SK-N-SH
4
T-cell
4
angular gyrus
4
bone tissue
4
bronchial epithelial cell
4
cardiac fibroblast
4
cingulate gyrus
4
colonic mucosa
4
duodenal mucosa
4
endodermal cell
4
endothelial cell of hepatic sinusoid
4
epithelial cell of esophagus
4
epithelial cell of prostate
4
esophagus
4
eye
4
fibroblast of breast
4
fibroblast of dermis
4
foreskin melanocyte
4
gamma-delta T cell
4
keratinocyte
4
kidney connecting tubule epithelial cell
4
kidney distal convoluted tubule epithelial cell
4
kidney epithelial cell
4
kidney glomerular epithelial cell
4
kidney tubule cell
4
left cardiac atrium
4
mammary gland epithelial cell
4
mesodermal cell
4
mucosa of rectum
4
muscle layer of colon
4
muscle layer of duodenum
4
myoepithelial cell of mammary gland
4
nephron progenitor
4
neural cell
4
neutrophil
4
osteoblast
4
pancreatic acinar cell
4
pancreatic alpha cell
4
pancreatic beta cell
4
pancreatic delta cell
4
peripheral blood mononuclear cell
4
prostate gland
4
putamen
4
renal cortical epithelial cell
4
skeletal muscle fiber
4
skeletal muscle satellite cell
4
stomach smooth muscle
4
tongue
4
trophoblast
4
uterus
4
vascular associated smooth muscle cell
3
Adaptive / Maladaptive / Repairing Fibroblast
3
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
3
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
3
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
3
Afferent / Efferent Arteriole Endothelial Cell
3
Ammon's horn
3
B Cell
3
Classical Dendritic Cell
3
Connecting Tubule Cell
3
Connecting Tubule Intercalated Cell Type A
3
Connecting Tubule Principal Cell
3
Cortical Thick Ascending Limb Cell
3
Cycling Endothelial Cell
3
Cycling Epithelial Cell
3
Cycling Mononuclear Phagocyte
3
Cycling T Cell
3
Cytotoxic T Cell
3
Degenerative Connecting Tubule Cell
3
Degenerative Connecting Tubule Cell / Principal Cell
3
Degenerative Cortical Thick Ascending Limb Cell
3
Degenerative Distal Convoluted Tubule Cell
Life stage
2
embryonic
Date released
3
February, 2024
1
February, 2021
1
May, 2021
1
September, 2022
Software used
3
r
2
deltasvm
1
deeptools
1
encode-ccres
1
samtools
1
umitools
Lab
3
AMP-T2D consortium
2
Bing Ren, UCSD
1
Stephen Parker, UMich
Project
6
AMP
RFA
5
AMP
1
AMP2
Showing 6 of 6 results
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Download
FileSet
DSR087ISF
released
Annotation file set
: Candidate regulatory elements for BSS01612 smooth muscle cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR656HJI
released
Annotation file set
: Gene expression annotation of smooth muscle cell_SMC ISL1-SMMHC+ on day 10 from embryonic stem cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR634BEA
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE smooth muscle cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR873DHZ
released
Annotation file set
: Cell type gene expression mean TPM and bw of smooth muscle cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR475VRW
released
Annotation file set
: Variant allelic effects annotation of Smooth muscle cells (sub-type2) from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP
FileSet
DSR798NUZ
released
Annotation file set
: Variant allelic effects annotation of Smooth muscle cells from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP