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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
6
accessible chromatin
6
candidate regulatory elements
6
chromatin state
6
target gene predictions
2
gene expression
1
binding sites
1
histone modifications
1
variant allelic effects
Annotation Category
6
cis-regulatory elements
2
Gene expression levels
Annotation type Category
4
ChIP-seq
4
DNase-seq
2
snATAC-seq
1
RNA-seq
1
snRNA-seq
Available data
6
bed bed3+
1
tsv
File set status
8
released
Genome assembly (visualization)
7
hg19
2
GRCh38
Organism
8
Homo sapiens
Biosample type
5
in vitro differentiated cells
3
primary cell
Biosample term
41
stomach
40
heart
36
kidney
lung
33
muscle of arm
30
brain
29
adrenal gland
29
small intestine
28
muscle of back
27
common myeloid progenitor, CD34-positive
27
large intestine
27
muscle of leg
26
left lung
26
placenta
22
right lung
21
A549
20
hematopoietic multipotent progenitor cell
20
renal cortex interstitium
20
right kidney
20
thymus
19
B cell
19
renal pelvis
18
epithelial cell of proximal tubule
18
left kidney
17
hepatocyte
16
glomerular endothelial cell
16
spleen
15
monocyte
14
CD4-positive, alpha-beta memory T cell
14
liver
14
spinal cord
13
T-helper 1 cell
13
endothelial cell
12
T-helper 17 cell
12
heart left ventricle
12
neural progenitor cell
12
regulatory T cell
11
cardiomyocytes
11
foreskin keratinocyte
11
islet of Langerhans
11
natural killer cell
10
CD8-positive, alpha-beta T cell
10
adipose tissue
10
body of pancreas
10
sigmoid colon
9
H1-hESC
9
MCF-7
9
extended pluripotent stem (EPS) cells
9
induced pluripotent stem cell
9
ovary
9
progenitor cell of endocrine pancreas
9
trophoblast cell
8
CD14-positive monocyte
8
CD4-positive, alpha-beta T cell
8
CD8-positive, alpha-beta memory T cell
8
EndoC_BH1
8
T-helper 2 cell
8
adipocyte
8
chorionic villus
8
gastrocnemius medialis
8
muscle of trunk
8
testis
8
thyroid gland
8
tibial nerve
8
transverse colon
7
H9
7
K562
7
Peyer's patch
7
endocrine pancreas
7
foreskin fibroblast
7
glomerular visceral epithelial cell
7
heart right ventricle
7
kidney loop of Henle thin ascending limb epithelial cell
7
mononuclear cell
7
neurosphere
7
omental fat pad
7
psoas muscle
7
retina
7
skeletal muscle tissue
7
subcutaneous adipose tissue
7
upper lobe of left lung
6
cardiac muscle cell
6
caudate nucleus
6
dermis blood vessel endothelial cell
6
endothelial cell of umbilical vein
6
esophagus squamous epithelium
6
fibroblast of lung
6
kidney interstitial cell
6
layer of hippocampus
6
left renal cortex interstitium
6
left renal pelvis
6
lower leg skin
6
pancreatic ductal cell
6
right renal pelvis
6
smooth muscle cell
6
substantia nigra
6
temporal lobe
5
HeLa-S3
5
WI38
5
aorta
5
ascending aorta
5
breast epithelium
5
cerebellum
5
esophagus muscularis mucosa
5
gastroesophageal sphincter
5
kidney cortex collecting duct principal cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
macrophage
5
mesangial cell
5
mesenchymal stem cell
5
naive thymus-derived CD4-positive, alpha-beta T cell
5
pancreas
5
parathyroid adenoma
5
right atrium auricular region
5
right renal cortex interstitium
5
skeletal muscle myoblast
5
subcutaneous abdominal adipose tissue
5
vagina
4
22Rv1
4
SK-N-DZ
4
SK-N-SH
4
T cell
4
T-cell
4
angular gyrus
4
bone tissue
4
bronchial epithelial cell
4
cardiac fibroblast
4
cardiac precursors (cardiac muscle cell)
4
cardiomyocytes (cardiac muscle cell)
4
cingulate gyrus
4
colonic mucosa
4
coronary artery
4
duodenal mucosa
endodermal cell
4
endothelial cell of hepatic sinusoid
4
epithelial cell of prostate
4
esophagus
4
eye
4
fibroblast of breast
4
fibroblast of dermis
4
foreskin melanocyte
4
frontal cortex
4
gamma-delta T cell
4
kidney connecting tubule epithelial cell
4
kidney distal convoluted tubule epithelial cell
4
kidney tubule cell
4
mast cell
4
mesodermal cell
4
mucosa of rectum
4
muscle layer of colon
4
muscle layer of duodenum
4
myoepithelial cell of mammary gland
4
nephron progenitor
4
neural cell
4
neuronal stem cell
4
neutrophil
4
osteoblast
4
peripheral blood mononuclear cell
4
prostate gland
4
skeletal muscle satellite cell
4
stomach smooth muscle
4
thoracic aorta
4
tibial artery
4
tongue
4
trophoblast
4
uterus
3
Adaptive / Maladaptive / Repairing Fibroblast
3
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
3
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
3
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
3
Afferent / Efferent Arteriole Endothelial Cell
3
Ammon's horn
3
B Cell
3
Classical Dendritic Cell
3
Connecting Tubule Cell
3
Connecting Tubule Intercalated Cell Type A
3
Connecting Tubule Principal Cell
3
Cortical Thick Ascending Limb Cell
3
Cycling Endothelial Cell
3
Cycling Epithelial Cell
3
Cycling Mononuclear Phagocyte
3
Cycling T Cell
3
Cytotoxic T Cell
3
Degenerative Connecting Tubule Cell
3
Degenerative Connecting Tubule Cell / Principal Cell
3
Degenerative Cortical Thick Ascending Limb Cell
3
Degenerative Distal Convoluted Tubule Cell
3
Degenerative Intercalated Cell Type A
3
Degenerative Peritubular Capillary Endothelial Cell
3
Degenerative Principal Cell
3
Degenerative Proximal Tubule Epithelial Cell
3
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
3
Degenerative Vascular Smooth Muscle Cell
3
Descending Thin Limb Cell Type 1
3
Distal Convoluted Tubule Cell Type 1
3
Fibroblast
3
Glomerular Capillary Endothelial Cell
3
HEK293
3
Intercalated Cell Type A
3
Intercalated Cell Type B
Disease term
2
heart failure
Organ
8
connective tissue
Life stage
5
adult
2
unknown
Date released
3
February, 2021
2
May, 2024
2
September, 2022
1
February, 2024
Software used
4
r
2
encode-ccres
1
deeptools
1
samtools
1
umitools
Lab
5
AMP-T2D consortium
2
Kyle Gaulton, UCSD
1
Stephen Parker, UMich
Project
8
AMP
RFA
5
AMP
3
AMP2
biosample_term_name!
endodermal cell
lung
Showing 8 of 8 results
table-tab-icon
matrix-icon
Download
FileSet
DSR095UPL
released
Annotation file set
: Candidate cis-Regulatory Elements (cCREs) of adipocyte derived from RV snATAC-seq
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR542XFW
released
Annotation file set
: Candidate cis-Regulatory Elements (cCREs) of adipocyte derived from LV snATAC-seq
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR611GAA
released
Annotation file set
: Candidate regulatory elements for BSS00039 adipocyte from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR854ZLT
released
Annotation file set
: Candidate regulatory elements for BSS00038 adipocyte from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR356IFR
released
Annotation file set
: Gene expression annotation of adipocyte from abdominal and gluteo-femoral preadipocytes of GSE118500 for GSE118497
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR810TFD
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE adipocyte
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR462QHF
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE adipocyte
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR143RUO
released
Annotation file set
: Cell type gene expression mean TPM and bw of adipocyte from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP