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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
1
accessible chromatin
1
binding sites
1
chromatin state
1
gene expression
1
histone modifications
1
target gene predictions
Annotation Category
2
cis-regulatory elements
1
Gene expression levels
Annotation type Category
2
ChIP-seq
2
DNase-seq
1
RNA-seq
Available data
2
bed bed3+
1
tsv
File set status
3
released
Genome assembly (visualization)
2
hg19
Organism
3
Homo sapiens
Biosample type
3
in vitro differentiated cells
Biosample term
38
heart
33
muscle of arm
32
kidney
30
brain
30
lung
29
stomach
28
muscle of back
27
large intestine
27
muscle of leg
26
left lung
26
placenta
25
small intestine
22
right lung
20
renal cortex interstitium
20
right kidney
20
thymus
19
renal pelvis
18
left kidney
16
adrenal gland
14
spinal cord
12
neural progenitor cell
11
CD4-positive, alpha-beta memory T cell
11
cardiomyocytes
11
foreskin keratinocyte
9
H1-hESC
9
extended pluripotent stem (EPS) cells
9
induced pluripotent stem cell
9
progenitor cell of endocrine pancreas
9
trophoblast cell
8
EndoC_BH1
8
T-helper 17 cell
8
chorionic villus
8
muscle of trunk
7
H9
7
common myeloid progenitor, CD34-positive
7
foreskin fibroblast
7
neurosphere
6
cardiac muscle cell
6
endothelial cell of umbilical vein
6
heart left ventricle
6
islet of Langerhans
6
left renal cortex interstitium
6
left renal pelvis
6
retina
6
right renal pelvis
5
B cell
5
T-helper 1 cell
5
T-helper 2 cell
5
WI38
5
heart right ventricle
5
liver
5
pancreatic ductal cell
5
right renal cortex interstitium
4
22Rv1
4
SK-N-DZ
4
SK-N-SH
4
bronchial epithelial cell
4
cardiac precursors (cardiac muscle cell)
4
cardiomyocytes (cardiac muscle cell)
4
endodermal cell
4
epithelial cell of prostate
4
eye
4
foreskin melanocyte
4
mesodermal cell
4
naive thymus-derived CD4-positive, alpha-beta T cell
4
nephron progenitor
4
neural cell
4
neutrophil
4
regulatory T cell
4
smooth muscle cell
4
spleen
4
tongue
4
trophoblast
3
CD4-positive, alpha-beta T cell
3
CD8-positive, alpha-beta T cell
3
CD8-positive, alpha-beta memory T cell
3
HEK293
3
S-shaped body
3
adipocyte
3
astrocyte
3
cardiac fibroblast
3
central memory CD8-positive, alpha-beta T cell
3
chorion membrane
3
dermis blood vessel endothelial cell
3
effector memory CD8-positive, alpha-beta T cell
3
endothelial cell
3
fibroblast of lung
3
glomerular endothelial cell
3
glomerular visceral epithelial cell
3
hematopoietic multipotent progenitor cell
3
hepatocyte
3
hepatocyte(AFP)
3
keratinocyte
3
kidney epithelial cell
3
kidney interstitial cell
3
left cardiac atrium
3
limb
3
lung microvascular endothelial cell
3
memory B cell
3
mesenchymal stem cell
3
naive thymus-derived CD8-positive, alpha-beta T cell
3
osteoblast
3
skeletal muscle tissue
3
testis
2
A673
2
CD14-positive monocyte
2
CD1c-positive myeloid dendritic cell
2
CD4-positive, CD25-positive, alpha-beta regulatory T cell
2
DND-41
2
Daoy
2
EH
2
EL
2
ELF-1
2
ELR
2
G401
2
GM08714
2
GM12864
2
GM12865
2
HUES48
2
HUES6
2
HUES64
2
HepG2
2
IMR-90
2
KOPT-K1
2
L1-S8
2
MG63
2
PC-9
2
Panc1
2
SJCRH30
2
SK-N-MC
2
T follicular helper cell
2
T-cell
2
UCSF-4
2
WERI-Rb-1
2
amnion
2
astrocyte of the cerebellum
2
astrocyte of the hippocampus
2
astrocyte of the spinal cord
2
brain microvascular endothelial cell
2
cardiac myoblast
2
cardiovascular progenitor cell
2
chorion
2
choroid plexus epithelial cell
2
dermis lymphatic vessel endothelial cell
2
dermis microvascular lymphatic vessel endothelial cell
2
ectodermal cell
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD4-positive, alpha-beta T cell
2
epithelial cell of esophagus
2
epithelial cell of proximal tubule
2
femur
2
fibroblast of cardiac tissue
2
fibroblast of dermis
2
fibroblast of gingiva
2
fibroblast of mammary gland
2
fibroblast of peridontal ligament
2
fibroblast of pulmonary artery
2
fibroblast of the aortic adventitia
2
fibroblast of the conjunctiva
2
fibroblast of villous mesenchyme
2
gamma-delta T cell
2
germinal matrix
2
iPS DF 19.11
2
iPS DF 19.7
2
iPS DF 6.9
2
iris pigment epithelial cell
2
islet precursor cell
2
leukocyte
2
mature natural killer cell
2
memory T cell
2
memory regulatory T cell
2
mesangial cell
2
mesendoderm
2
monocyte
2
mononuclear cell
2
naive B cel
2
neuroepithelial stem cell
2
neuron
2
neuronal stem cell
2
non-pigmented ciliary epithelial cell
2
ovary
2
pancreatic acinar cell
2
pancreatic alpha cell
2
pancreatic beta cell
2
pancreatic delta cell
2
pancreatic stellate cell
2
placental basal plate
2
psoas muscle
2
pulmonary artery endothelial cell
2
renal cortical epithelial cell
2
renal vesicle
2
retinal pigment epithelial cell
2
sigmoid colon
2
skeletal muscle cell
2
skeletal muscle fiber
2
skeletal muscle myoblast
2
skin fibroblast
2
smooth muscle cell of the brain vasculature
2
stromal cell of bone marrow
Life stage
adult
2
unknown
Date released
1
February, 2021
1
May, 2021
1
September, 2022
Software used
2
r
1
encode-ccres
Lab
3
AMP-T2D consortium
Project
3
AMP
RFA
3
AMP
organ_slims!
blood
relevant_life_stage!
adult
Showing 3 of 3 results
table-tab-icon
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Download
FileSet
DSR993OAS
released
Annotation file set
: Candidate regulatory elements for BSS00543 hematopoietic multipotent progenitor cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR782OVI
released
Annotation file set
: Gene expression annotation of multipotent stem cell_multipotent cardiac progenitor (MCP) PDGFRA+ISL1+ on day 3 from embryonic stem cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR342QFZ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE hematopoietic multipotent progenitor cell
Lab:
AMP-T2D consortium
Project:
AMP