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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
1
accessible chromatin
1
binding sites
1
chromatin state
1
histone modifications
1
target gene predictions
Annotation Category
3
cis-regulatory elements
Annotation type Category
3
ChIP-seq
2
DNase-seq
Available data
3
bed bed3+
File set status
3
released
Genome assembly (visualization)
3
hg19
Organism
3
Homo sapiens
Biosample type
3
cell line
Biosample term
86
monocyte
41
stomach
38
heart
37
CD8-positive, alpha-beta T cell
33
lung
33
muscle of arm
32
brain
31
kidney
28
adrenal gland
28
muscle of back
28
placenta
27
common myeloid progenitor, CD34-positive
27
muscle of leg
26
left lung
22
A549
22
right lung
21
neural progenitor cell
21
thymus
20
hematopoietic multipotent progenitor cell
20
renal cortex interstitium
20
right kidney
19
renal pelvis
18
left kidney
16
B cell
15
liver
15
spinal cord
15
spleen
14
CD4-positive, alpha-beta memory T cell
12
foreskin keratinocyte
12
heart left ventricle
11
MCF-7
11
breast cancer cell
9
foreskin fibroblast
9
gastric cancer cell
9
trophoblast cell
8
CD14-positive monocyte
8
CD4-positive, alpha-beta T cell
8
CD8-positive, alpha-beta memory T cell
8
K562
8
Rhabdomyosarcoma
8
body of pancreas
8
cardiac muscle cell
8
chorionic villus
8
gastrocnemius medialis
8
muscle of trunk
8
natural killer cell
8
neuroblastoma cell
8
ovary
8
testis
8
upper lobe of left lung
7
H9
7
HepG2
7
adipose tissue
7
diffuse intrinsic pontine glioma
7
endocrine pancreas
7
esophageal adenocarcinoma
7
hepatocyte
7
layer of hippocampus
7
mononuclear cell
7
neurosphere
7
psoas muscle
7
retina
7
skeletal muscle tissue
7
thyroid gland
6
B-lymphoblastoid cell line
6
Chondroid Chordoma
6
T-helper 1 cell
6
bronchial epithelial cell
6
caudate nucleus
6
dermis blood vessel endothelial cell
6
endothelial cell of umbilical vein
6
esophagus squamous epithelium
6
fibroblast of lung
6
hESC cell
6
heart right ventricle
6
keratinocyte
6
left renal cortex interstitium
6
left renal pelvis
6
liposarcoma
6
lower leg skin
6
mammary epithelial cell
6
neuroblastoma cell line
6
pancreas
6
prostate gland
6
regulatory T cell
6
right renal pelvis
6
squamous cell lung carcinoma
6
temporal lobe
5
22Rv1
5
HeLa-S3
5
SK-N-DZ
5
T cell
5
T-cell acute lymphoblastic leukemia
5
T-helper 17 cell
5
T-helper 2 cell
5
WI38
5
adipocyte
5
breast epithelium
5
endodermal cell
5
epithelial cell of prostate
5
esophagus muscularis mucosa
5
fibroblast of cardiac tissue
5
foreskin melanocyte
5
gastroesophageal sphincter
5
melanoma cell
5
mesenchymal stem cell
5
mesodermal cell
5
neuronal stem cell
5
omental fat pad
5
osteosarcoma
5
parathyroid adenoma
5
peripheral blood mononuclear cell
5
right renal cortex interstitium
5
subcutaneous abdominal adipose tissue
5
substantia nigra
5
tibial nerve
4
HEK293
4
SK-N-SH
4
T-cell
4
angular gyrus
4
aorta
4
ascending aorta
4
cerebellum
4
cingulate gyrus
4
esophagus
4
eye
4
fibroblast of breast
4
fibroblast of dermis
4
mammary gland epithelial cell
4
myoepithelial cell of mammary gland
4
naive thymus-derived CD4-positive, alpha-beta T cell
4
neutrophil
4
osteoblast
4
rhabdomyosarcoma cell
4
skeletal muscle myoblast
4
stomach smooth muscle
4
thoracic aorta
3
CD1c-positive myeloid dendritic cell
3
CMK
3
Ewing sarcoma
3
GM06990
3
GM12864
3
GM12865
3
GM12875
3
GM12878
3
GM23248
3
HAP-1
3
HL-60
3
IMR-90
LHCN-M2
3
LNCAP
3
LNCaP clone FGC
3
MCF 10A
3
MG63
3
MM.1S
3
NAMALWA cell
3
OCI-LY1
3
OCI-LY7
3
PC-3
3
PC-9
3
RPMI8226
3
RWPE1
3
SK-MEL-5
3
SK-N-MC
3
T47D
3
WERI-Rb-1
3
acute myeloid leukemia
3
astrocyte
3
cardiac fibroblast
3
chorion membrane
3
choroid plexus epithelial cell
3
coronary artery
3
dermis lymphatic vessel endothelial cell
3
diffuse large B-cell lymphoma
3
endometrium adenocarcinoma
3
esophageal squamous cell carcinoma
3
fibroblast of mammary gland
3
fibroblast of pulmonary artery
3
fibroblast of villous mesenchyme
3
glioblastoma cell
3
glioma cell
3
globus pallidus
3
hepatic stellate cell
3
immortal human breast epithelial cell line cell
3
kidney tubule cell
3
limb
3
lung microvascular endothelial cell
3
lymphoblast
3
lymphoblastoid cell line
3
mesendoderm
3
naive T cell
3
neural cell
3
pancreatic ductal adenocarcinoma
3
pulmonary artery endothelial cell
3
putamen
3
retinal pigment epithelial cell
3
right atrium auricular region
3
skin fibroblast
3
suprapubic skin
3
tibial artery
Disease term
1
parathyroid gland clear cell adenoma
Organ
3
prostate gland
Life stage
2
adult
Date released
2
February, 2021
1
September, 2022
Software used
1
encode-ccres
1
macs
1
r
Lab
3
AMP-T2D consortium
Project
3
AMP
RFA
3
AMP
biosample_term_name!
LHCN-M2
organ_slims!
intestine
Showing 3 of 3 results
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Download
FileSet
DSR916LNK
released
Annotation file set
: Candidate regulatory elements for BSS01414 PC-3 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR239OGV
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE PC-3
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR546KFG
released
Annotation file set
: Histone modifications annotation for Prostate PC-3 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP