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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
6
accessible chromatin
6
chromatin state
6
target gene predictions
4
candidate regulatory elements
2
gene expression
1
binding sites
1
histone modifications
1
variant allelic effects
Annotation Category
5
cis-regulatory elements
Annotation type Category
5
ChIP-seq
4
DNase-seq
Available data
5
bed bed3+
File set status
5
released
Genome assembly (visualization)
5
hg19
Organism
5
Homo sapiens
Biosample type
5
in vitro differentiated cells
Biosample term
86
monocyte
41
stomach
38
heart
37
CD8-positive, alpha-beta T cell
33
lung
33
muscle of arm
32
brain
31
kidney
29
small intestine
28
adrenal gland
28
large intestine
28
muscle of back
28
placenta
27
common myeloid progenitor, CD34-positive
27
muscle of leg
26
left lung
22
right lung
21
neural progenitor cell
21
thymus
20
hematopoietic multipotent progenitor cell
20
renal cortex interstitium
20
right kidney
19
renal pelvis
18
left kidney
16
B cell
15
liver
15
spleen
14
CD4-positive, alpha-beta memory T cell
14
spinal cord
12
foreskin keratinocyte
12
heart left ventricle
10
sigmoid colon
10
trophoblast cell
8
CD14-positive monocyte
8
CD4-positive, alpha-beta T cell
8
CD8-positive, alpha-beta memory T cell
8
body of pancreas
8
chorionic villus
8
foreskin fibroblast
8
gastrocnemius medialis
8
muscle of trunk
8
natural killer cell
8
ovary
8
testis
8
thyroid gland
8
transverse colon
8
upper lobe of left lung
7
Peyer's patch
7
adipose tissue
7
endocrine pancreas
7
hepatocyte
7
layer of hippocampus
7
mononuclear cell
7
neurosphere
7
psoas muscle
7
retina
7
skeletal muscle tissue
6
T-helper 1 cell
6
cardiac muscle cell
6
caudate nucleus
6
esophagus squamous epithelium
6
fibroblast of lung
6
heart right ventricle
6
left renal cortex interstitium
6
left renal pelvis
6
lower leg skin
6
mammary epithelial cell
6
neuroblastoma cell line
6
pancreas
6
prostate gland
6
regulatory T cell
6
right renal pelvis
6
substantia nigra
6
temporal lobe
6
tibial nerve
5
T-cell acute lymphoblastic leukemia
5
T-helper 17 cell
5
T-helper 2 cell
5
adipocyte
5
breast epithelium
5
bronchial epithelial cell
5
colonic mucosa
5
esophagus muscularis mucosa
5
foreskin melanocyte
5
gastroesophageal sphincter
5
keratinocyte
5
mesenchymal stem cell
5
mesodermal cell
5
neuronal stem cell
5
omental fat pad
5
parathyroid adenoma
5
peripheral blood mononuclear cell
5
right renal cortex interstitium
5
skeletal muscle myoblast
5
subcutaneous abdominal adipose tissue
4
T cell
4
T-cell
4
angular gyrus
4
cerebellum
4
cingulate gyrus
4
duodenal mucosa
4
endodermal cell
4
epithelial cell of prostate
4
esophagus
4
eye
4
fibroblast of breast
4
fibroblast of dermis
4
mammary gland epithelial cell
4
mucosa of rectum
4
muscle layer of colon
4
muscle layer of duodenum
4
myoepithelial cell of mammary gland
4
naive thymus-derived CD4-positive, alpha-beta T cell
4
neutrophil
4
osteoblast
4
rhabdomyosarcoma cell
4
stomach smooth muscle
4
tongue
4
trophoblast
4
vagina
3
CD1c-positive myeloid dendritic cell
3
astrocyte
3
cardiac fibroblast
3
chorion membrane
3
fibroblast of cardiac tissue
3
fibroblast of mammary gland
3
fibroblast of villous mesenchyme
globus pallidus
3
kidney tubule cell
3
limb
3
lung microvascular endothelial cell
3
mesendoderm
3
naive T cell
3
neural cell
3
pancreatic ductal adenocarcinoma
3
putamen
3
retinal pigment epithelial cell
3
right atrium auricular region
3
suprapubic skin
3
umbilical cord
3
urinary bladder
3
uterus
2
Ammon's horn
2
Brodmann (1909) area 46
2
Th1 cell
2
acute myeloid leukemia cell
2
amnion
2
astrocyte of the cerebellum
2
astrocyte of the hippocampus
2
astrocyte of the spinal cord
2
bipolar neuron
2
cardiac myoblast
2
cardiovascular progenitor cell
2
cerebellar cortex
2
chorion
2
choroid plexus epithelial cell
2
colon adenocarcinoma
2
dermis lymphatic vessel endothelial cell
2
dermis microvascular lymphatic vessel endothelial cell
2
ectodermal cell
2
endometriosis
2
epithelial cell of esophagus
2
epithelial cell of proximal tubule
2
erythroid progenitor cell
2
esophageal adenocarcinoma
2
femur
2
fibroblast of gingiva
2
fibroblast of peridontal ligament
2
fibroblast of the conjunctiva
2
frontal cortex
2
germinal matrix
2
glomerular endothelial cell
2
glomerular visceral epithelial cell
2
hepatic stellate cell
2
iris pigment epithelial cell
2
islet precursor cell
2
kidney epithelial cell
2
kidney glomerular epithelial cell
2
left cardiac atrium
2
mantle cell lymphoma cell
2
medulloblastoma cell line
2
midbrain
2
middle frontal area 46
2
middle frontal gyrus
2
mucosa of stomach
2
muscle cell
2
myotube
2
neuroepithelial stem cell
2
neuron
2
non-pigmented ciliary epithelial cell
2
occipital lobe
2
pancreatic ductal cell
2
placental basal plate
2
pre-B acute lymphoblastic leukemia cell
2
preadipocyte
2
renal cortical epithelial cell
2
right cardiac atrium
2
right lobe of liver
2
skeletal muscle cell
2
skeletal muscle satellite cell
Organ
5
connective tissue
Life stage
2
adult
2
unknown
Date released
3
February, 2021
2
September, 2022
Software used
2
encode-ccres
2
r
1
macs
Lab
5
AMP-T2D consortium
Project
5
AMP
RFA
5
AMP
biosample_term_name!
globus pallidus
biosample_type!
cell line
organ_slims!
blood vessel
Showing 5 of 5 results
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Download
FileSet
DSR611GAA
released
Annotation file set
: Candidate regulatory elements for BSS00039 adipocyte from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR854ZLT
released
Annotation file set
: Candidate regulatory elements for BSS00038 adipocyte from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR810TFD
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE adipocyte
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR462QHF
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE adipocyte
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR014GTX
released
Annotation file set
: Histone modifications annotation for Adipocyte Adipocytes from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP