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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
accessible chromatin
2
binding sites
2
candidate regulatory elements
1
chromatin state
1
histone modifications
1
target gene predictions
1
variant allelic effects
Annotation Category
3
cis-regulatory elements
Annotation type Category
3
ChIP-seq
2
DNase-seq
Available data
3
bed bed3+
File set status
3
released
Genome assembly (visualization)
3
hg19
Organism
3
Homo sapiens
Biosample type
tissue
2
primary cell
1
cell line
Biosample term
86
monocyte
37
CD8-positive, alpha-beta T cell
27
common myeloid progenitor, CD34-positive
22
A549
21
neural progenitor cell
20
hematopoietic multipotent progenitor cell
16
B cell
14
CD4-positive, alpha-beta memory T cell
12
foreskin keratinocyte
11
MCF-7
11
breast cancer cell
10
trophoblast cell
9
foreskin fibroblast
9
gastric cancer cell
8
CD14-positive monocyte
8
CD4-positive, alpha-beta T cell
8
CD8-positive, alpha-beta memory T cell
8
K562
8
Rhabdomyosarcoma
8
cardiac muscle cell
8
natural killer cell
8
neuroblastoma cell
7
H9
7
HepG2
7
diffuse intrinsic pontine glioma
7
esophageal adenocarcinoma
7
hepatocyte
7
mononuclear cell
7
neurosphere
6
B-lymphoblastoid cell line
6
Chondroid Chordoma
6
T-helper 1 cell
6
bronchial epithelial cell
6
dermis blood vessel endothelial cell
6
endothelial cell of umbilical vein
6
fibroblast of lung
6
hESC cell
6
keratinocyte
6
liposarcoma
6
mammary epithelial cell
6
neuroblastoma cell line
6
regulatory T cell
6
squamous cell lung carcinoma
5
22Rv1
5
HeLa-S3
5
SK-N-DZ
5
T cell
5
T-cell acute lymphoblastic leukemia
5
T-helper 17 cell
5
T-helper 2 cell
5
WI38
5
adipocyte
5
endodermal cell
5
epithelial cell of prostate
5
fibroblast of cardiac tissue
5
foreskin melanocyte
5
melanoma cell
5
mesenchymal stem cell
5
mesodermal cell
5
neuronal stem cell
5
osteosarcoma
5
peripheral blood mononuclear cell
5
skeletal muscle myoblast
4
HEK293
4
SK-N-SH
4
T-cell
4
fibroblast of breast
4
fibroblast of dermis
4
mammary gland epithelial cell
4
myoepithelial cell of mammary gland
4
naive thymus-derived CD4-positive, alpha-beta T cell
4
neutrophil
4
osteoblast
4
rhabdomyosarcoma cell
3
CD1c-positive myeloid dendritic cell
3
CMK
3
Ewing sarcoma
3
GM06990
3
GM12864
3
GM12865
3
GM12875
3
GM12878
3
GM23248
3
HAP-1
3
HL-60
3
HT-29
3
IMR-90
3
LHCN-M2
3
LNCAP
3
LNCaP clone FGC
3
MCF 10A
3
MG63
3
MM.1S
3
NAMALWA cell
3
OCI-LY1
3
OCI-LY7
3
PC-3
3
PC-9
3
RPMI8226
3
RWPE1
3
SK-MEL-5
3
SK-N-MC
3
SW480
3
T47D
3
WERI-Rb-1
3
acute myeloid leukemia
3
astrocyte
3
cardiac fibroblast
3
choroid plexus epithelial cell
3
dermis lymphatic vessel endothelial cell
3
diffuse large B-cell lymphoma
3
endometrium adenocarcinoma
3
esophageal squamous cell carcinoma
3
fibroblast of mammary gland
3
fibroblast of pulmonary artery
3
fibroblast of villous mesenchyme
3
glioblastoma cell
3
glioma cell
3
hepatic stellate cell
3
immortal human breast epithelial cell line cell
3
kidney tubule cell
3
lung microvascular endothelial cell
3
lymphoblast
3
lymphoblastoid cell line
3
mesendoderm
3
naive T cell
3
neural cell
3
pancreatic ductal adenocarcinoma
3
pulmonary artery endothelial cell
3
retinal pigment epithelial cell
3
skin fibroblast
2
A172
2
A673
2
ACC112
2
ACHN
2
AG04449 cell
2
AG04450 cell
2
AG09309 cell
2
AG09319 cell
2
AG10803
2
AG10803 cell
2
B-lymphocyte
2
BE(2)-C
2
BJ cell
2
C4-2B
2
COLO205
2
Caco-2 cell
2
Caki2
2
DND-41
2
DOHH2
2
Daoy
2
EH
2
EL
2
ELF-1
2
ELR
2
G401
2
GM04503
2
GM04504
2
GM08714
2
GM10248
2
GM10266
2
GM12873
2
GM12891
2
GM12892
2
GM18507
2
GM19238
2
GM19239
2
GM19240
2
GM23338
2
H1-hESC
2
H4
2
H54
2
H7-hESC
2
HCT116
2
HK-2 cell
2
HS-27A
2
HS-5
2
HS-SY-2 cell
2
HT1080
2
HUES48
2
HUES6
2
HUES64
2
HuH-7
2
Ishikawa
2
Jurkat
2
KARPAS-422 cell
2
KBM-7
2
KMS-11
2
KOPT-K1
2
L1-S8
2
LoVo cell
2
Loucy
2
M059J
2
Mantle cell lymphoma
2
NAMALWA
2
NB4
2
NCI-H929
2
NT2-D1 cell
2
OCI-LY3
2
Panc1
Organ
3
brain
3
epithelium
3
vasculature
Life stage
2
unknown
Date released
2
February, 2021
1
September, 2022
Software used
1
encode-ccres
1
macs
1
r
Lab
3
AMP-T2D consortium
Project
3
AMP
RFA
3
AMP
biosample_term_name!
upper lobe of left lung
biosample_type!
tissue
Showing 3 of 3 results
table-tab-icon
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Download
FileSet
DSR064DCO
released
Annotation file set
: Candidate regulatory elements for BSS00218 choroid plexus epithelial cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR982GZF
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE choroid plexus epithelial cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR023RXU
released
Annotation file set
: Histone modifications annotation for Neural HCPEpiC from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP