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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
4
accessible chromatin
3
candidate regulatory elements
3
chromatin state
3
target gene predictions
2
gene expression
2
variant allelic effects
1
binding sites
1
histone modifications
Annotation Category
4
cis-regulatory elements
Annotation type Category
4
ChIP-seq
3
DNase-seq
Available data
4
bed bed3+
File set status
4
released
Genome assembly (visualization)
4
hg19
Organism
4
Homo sapiens
Biosample type
4
tissue
Biosample term
86
monocyte
37
CD8-positive, alpha-beta T cell
27
common myeloid progenitor, CD34-positive
22
A549
20
hematopoietic multipotent progenitor cell
16
B cell
16
neural progenitor cell
14
CD4-positive, alpha-beta memory T cell
14
stomach
13
spleen
12
adrenal gland
12
foreskin keratinocyte
12
liver
11
MCF-7
11
breast cancer cell
10
sigmoid colon
9
foreskin fibroblast
9
gastric cancer cell
8
CD14-positive monocyte
8
CD4-positive, alpha-beta T cell
8
CD8-positive, alpha-beta memory T cell
8
K562
8
Rhabdomyosarcoma
8
body of pancreas
8
gastrocnemius medialis
8
heart left ventricle
8
natural killer cell
8
neuroblastoma cell
8
thyroid gland
8
transverse colon
8
upper lobe of left lung
7
HepG2
7
Peyer's patch
7
adipose tissue
7
diffuse intrinsic pontine glioma
7
endocrine pancreas
7
esophageal adenocarcinoma
7
layer of hippocampus
7
mononuclear cell
7
psoas muscle
7
skeletal muscle tissue
6
B-lymphoblastoid cell line
6
Chondroid Chordoma
6
T-helper 1 cell
6
bronchial epithelial cell
6
caudate nucleus
6
dermis blood vessel endothelial cell
6
endothelial cell of umbilical vein
6
esophagus squamous epithelium
6
fibroblast of lung
6
hESC cell
6
keratinocyte
6
kidney
6
liposarcoma
6
lower leg skin
6
mammary epithelial cell
6
neuroblastoma cell line
6
ovary
6
pancreas
6
prostate gland
6
regulatory T cell
6
small intestine
6
squamous cell lung carcinoma
6
substantia nigra
6
temporal lobe
6
tibial nerve
5
22Rv1
5
HeLa-S3
5
SK-N-DZ
5
T cell
5
T-cell acute lymphoblastic leukemia
5
T-helper 17 cell
5
T-helper 2 cell
5
WI38
5
adipocyte
5
breast epithelium
5
colonic mucosa
5
epithelial cell of prostate
5
esophagus muscularis mucosa
5
foreskin melanocyte
5
gastroesophageal sphincter
5
hepatocyte
5
lung
5
melanoma cell
5
omental fat pad
5
osteosarcoma
5
parathyroid adenoma
5
peripheral blood mononuclear cell
5
skeletal muscle myoblast
5
subcutaneous abdominal adipose tissue
5
testis
4
SK-N-SH
4
T-cell
4
angular gyrus
4
aorta
4
ascending aorta
4
cardiac muscle cell
4
cerebellum
4
cingulate gyrus
4
duodenal mucosa
4
esophagus
4
fibroblast of breast
4
fibroblast of cardiac tissue
4
fibroblast of dermis
4
heart
4
heart right ventricle
4
mammary gland epithelial cell
4
mucosa of rectum
4
muscle layer of colon
4
muscle layer of duodenum
4
myoepithelial cell of mammary gland
4
naive thymus-derived CD4-positive, alpha-beta T cell
4
neutrophil
4
osteoblast
4
rhabdomyosarcoma cell
4
stomach smooth muscle
4
thoracic aorta
4
vagina
3
CD1c-positive myeloid dendritic cell
3
CMK
3
Ewing sarcoma
3
GM06990
3
GM12864
3
GM12865
3
GM12875
3
GM12878
3
GM23248
3
HAP-1
3
HL-60
3
HT-29
3
LHCN-M2
3
LNCAP
3
LNCaP clone FGC
3
MCF 10A
3
MG63
3
MM.1S
3
NAMALWA cell
OCI-LY1
3
OCI-LY7
3
PC-3
3
PC-9
3
RPMI8226
3
RWPE1
3
SK-MEL-5
3
SK-N-MC
3
SW480
3
T47D
3
WERI-Rb-1
3
acute myeloid leukemia
3
astrocyte
3
brain
3
choroid plexus epithelial cell
3
coronary artery
3
dermis lymphatic vessel endothelial cell
3
diffuse large B-cell lymphoma
3
endometrium adenocarcinoma
3
esophageal squamous cell carcinoma
3
fibroblast of mammary gland
3
fibroblast of pulmonary artery
3
fibroblast of villous mesenchyme
3
glioblastoma cell
3
glioma cell
3
globus pallidus
3
hepatic stellate cell
3
immortal human breast epithelial cell line cell
3
kidney tubule cell
3
lung microvascular endothelial cell
3
lymphoblast
3
lymphoblastoid cell line
3
mesenchymal stem cell
3
naive T cell
3
neuronal stem cell
3
pancreatic ductal adenocarcinoma
3
pulmonary artery endothelial cell
3
putamen
3
retinal pigment epithelial cell
3
right atrium auricular region
3
suprapubic skin
3
thymus
3
tibial artery
3
uterus
2
A172
2
A673
2
ACC112
2
ACHN
2
AG09309 cell
2
AG09319 cell
2
AG10803
2
AG10803 cell
2
Ammon's horn
2
B-lymphocyte
2
BE(2)-C
2
BJ cell
2
Brodmann (1909) area 46
2
C4-2B
2
COLO205
2
Caco-2 cell
2
Caki2
2
DND-41
2
DOHH2
Organ
4
heart
Life stage
embryonic
1
adult
1
child
1
young adult
Date released
2
February, 2021
2
September, 2022
Software used
2
r
1
encode-ccres
1
macs
Lab
4
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
biosample_term_name!
OCI-LY1
relevant_life_stage!
embryonic
Showing 4 of 4 results
table-tab-icon
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Download
FileSet
DSR238BKL
released
Annotation file set
: Candidate regulatory elements for BSS00516 heart from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR853SVT
released
Annotation file set
: Candidate regulatory elements for BSS00514 heart from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR349COL
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE heart
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR231NZC
released
Annotation file set
: Histone modifications annotation for Adipocyte Fetal_Heart from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP