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Schema
Citing CMDGA
Clear Filters
Annotation type
3
Fine-mapped variants
3
candidate regulatory elements
2
chromatin state
2
eQTL
gene expression
2
target gene predictions
1
accessible chromatin
1
histone modifications
Annotation Category
3
cis-regulatory elements
2
Target gene links
Annotation type Category
5
ChIP-seq
5
DNase-seq
Available data
5
bed bed3+
File set status
5
released
Genome assembly (visualization)
5
hg19
Organism
5
Homo sapiens
Biosample type
5
tissue
Biosample term
61
stomach
60
HeLa-S3
57
heart
50
lung
49
muscle of arm
46
small intestine
45
adrenal gland
45
brain
43
kidney
41
common myeloid progenitor, CD34-positive
41
large intestine
41
muscle of back
41
muscle of leg
41
placenta
40
A549
40
H1-hESC
39
left lung
34
thymus
33
right lung
30
K562
30
right kidney
29
hematopoietic multipotent progenitor cell
29
renal cortex interstitium
28
renal pelvis
27
CD14-positive monocyte
27
left kidney
24
B cell
23
CD4-positive, alpha-beta memory T cell
23
liver
23
spleen
22
spinal cord
19
HFFc6
18
heart left ventricle
17
sigmoid colon
16
trophoblast cell
CD8-positive, alpha-beta memory T cell
15
H9
15
MCF-7
15
adipose tissue
15
foreskin keratinocyte
15
psoas muscle
14
ovary
13
body of pancreas
13
gastrocnemius medialis
13
mononuclear cell
13
muscle of trunk
13
thyroid gland
13
transverse colon
12
CD8-positive, alpha-beta T cell
12
chorionic villus
11
CD4-positive, alpha-beta T cell
11
endocrine pancreas
11
heart right ventricle
11
natural killer cell
11
pericyte cell
10
GM12878
10
Peyer's patch
10
adipocyte
10
endothelial cell of umbilical vein
10
fibroblast of lung
10
foreskin fibroblast
10
neural progenitor cell
10
neurosphere
10
pancreas
10
pituitary stalk
10
testis
10
upper lobe of left lung
9
T-helper 1 cell
9
layer of hippocampus
9
regulatory T cell
9
retina
9
skeletal muscle tissue
9
smooth muscle cell
9
tibial nerve
8
T cell
8
T-helper 17 cell
8
T-helper 2 cell
8
aorta
8
breast epithelium
8
cardiac muscle cell
8
caudate nucleus
8
dermis blood vessel endothelial cell
8
esophagus squamous epithelium
8
fibroblast of dermis
8
keratinocyte
8
left renal cortex interstitium
8
left renal pelvis
8
lower leg skin
8
lymphocyte
8
mesenchymal stem cell
8
right renal pelvis
7
SK-N-SH
7
endothelial cell
7
epithelial cell of prostate
7
esophagus
7
esophagus muscularis mucosa
7
fibroblast of cardiac tissue
7
hepatocyte
7
mammary gland epithelial cell
7
neutrophil
7
omental fat pad
7
parathyroid adenoma
7
right renal cortex interstitium
7
skeletal muscle myoblast
7
substantia nigra
7
temporal lobe
7
trophoblast
6
22Rv1
6
SK-N-DZ
6
T-cell
6
WI38
6
angular gyrus
6
ascending aorta
6
astrocyte
6
bronchial epithelial cell
6
chorion membrane
6
cingulate gyrus
6
colonic mucosa
6
coronary artery
6
dendritic cell
6
duodenal mucosa
6
endodermal cell
6
endometrium adenocarcinoma
6
eye
6
fibroblast of breast
6
gastroesophageal sphincter
6
immortal human breast epithelial cell line cell
6
mucosa of rectum
6
muscle layer of colon
6
muscle layer of duodenum
6
myoepithelial cell of mammary gland
6
naive T cell
6
naive thymus-derived CD4-positive, alpha-beta T cell
6
olfactory receptor cell
6
prostate gland
6
stomach smooth muscle
6
thoracic aorta
6
tongue
6
vagina
5
HCT116
5
HepG2
5
LNCaP clone FGC
5
T47D
5
cerebellum
5
colon epithelial cell
5
foreskin melanocyte
5
kidney tubule cell
5
limb
5
mesendoderm
5
mesodermal cell
5
right atrium auricular region
5
skin fibroblast
5
subcutaneous abdominal adipose tissue
5
tibial artery
5
urinary bladder
5
uterus
4
A673
4
Ammon's horn
4
Brodmann (1909) area 46
4
CyT49
4
HAP-1
4
HEK293
4
HT-29
4
HUES8
4
IMR-90
4
MM.1S
4
NAMALWA cell
4
OCI-LY7
4
PC-9
4
Panc1
4
bipolar neuron
4
dermis lymphatic vessel endothelial cell
4
fibroblast
4
frontal cortex
4
iPS DF 19.11
4
iPSC derived cell line
4
luminal epithelial cell of mammary gland
4
lung microvascular endothelial cell
4
macrophage
4
mammary epithelial cell
4
muscle cell
4
neural cell
4
osteoblast
4
pancreatic delta cell
4
peripheral blood mononuclear cell
4
right cardiac atrium
4
skeletal muscle satellite cell
3
A172
3
ACC112
3
ACHN
3
C4-2B
3
CD1c-positive myeloid dendritic cell
3
CMK
3
Caki2
3
DND-41
3
DOHH2
3
Daoy
3
EH
3
EL
3
ELF-1
Organ
5
brain
Life stage
5
adult
Date released
4
September, 2022
1
February, 2021
Software used
4
r
1
encode-ccres
Lab
5
AMP-T2D consortium
Project
5
AMP
RFA
5
AMP
annotation_type!
gene expression
biosample_term_name!
CD8-positive, alpha-beta memory T cell
Showing 5 of 5 results
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Download
FileSet
DSR872CEQ
released
Annotation file set
: Candidate regulatory elements for BSS00207 cerebellum from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR159URQ
released
Annotation file set
: Candidate regulatory elements for BSS00206 cerebellum from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR591PMU
released
Annotation file set
: Target gene predictions for BSS00207 cerebellum from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR327SWD
released
Annotation file set
: Target gene predictions for BSS00206 cerebellum from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR943EVA
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE cerebellum
Lab:
AMP-T2D consortium
Project:
AMP