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Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
1
accessible chromatin
1
chromatin state
1
target gene predictions
1
variant allelic effects
Annotation Category
2
cis-regulatory elements
1
Target gene links
Annotation type Category
3
ChIP-seq
3
DNase-seq
Available data
3
bed bed3+
File set status
3
released
Genome assembly (visualization)
3
hg19
Organism
3
Homo sapiens
Biosample type
3
primary cell
Biosample term
49
muscle of arm
45
brain
41
muscle of back
41
muscle of leg
15
psoas muscle
13
gastrocnemius medialis
13
muscle of trunk
10
pituitary stalk
9
layer of hippocampus
9
skeletal muscle tissue
8
caudate nucleus
7
SK-N-SH
7
esophagus muscularis mucosa
7
substantia nigra
7
temporal lobe
6
SK-N-DZ
6
angular gyrus
6
cingulate gyrus
6
gastroesophageal sphincter
6
stomach smooth muscle
5
cerebellum
4
A673
4
Ammon's horn
4
Brodmann (1909) area 46
4
frontal cortex
3
A172
3
Daoy
3
H54
3
LHCN-M2
3
M059J
3
SJCRH30
3
SK-N-MC
3
astrocyte of the cerebellum
3
astrocyte of the hippocampus
3
brain microvascular endothelial cell
3
cerebellar cortex
3
choroid plexus epithelial cell
3
globus pallidus
3
middle frontal gyrus
3
putamen
3
skeletal muscle cell
3
skeletal muscle satellite cell
2
BE(2)-C
2
inferior parietal cortex
2
medulla oblongata
2
medulloblastoma
2
midbrain
2
middle frontal area 46
2
myotube
2
pons
2
rectum smooth muscle tissue
1
BE2C
1
ESC dervived hypothalamic neuron (arcuate nucleus)
1
ESC dervived hypothalamic progenitor (arcuate nucleus)
1
brain pericyte
1
dorsolateral prefrontal cortex
1
forelimb muscle
1
hindlimb muscle
1
rectal smooth muscle tissue
1
undifferentiated ESC (H9 cell line)
Organ
3
brain
0
musculature of body
Life stage
3
unknown
Date released
2
September, 2022
1
February, 2021
Software used
2
r
1
encode-ccres
Lab
3
AMP-T2D consortium
Project
3
AMP
RFA
3
AMP
award.project!
ENCODE
Showing 3 of 3 results
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Download
FileSet
DSR489AIN
released
Annotation file set
: Candidate regulatory elements for BSS00091 astrocyte of the hippocampus from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR113KBA
released
Annotation file set
: Target gene predictions for BSS00091 astrocyte of the hippocampus from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR990VSV
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE astrocyte of the hippocampus
Lab:
AMP-T2D consortium
Project:
AMP