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Citing CMDGA
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Annotation type
2
accessible chromatin
2
binding sites
2
histone modifications
2
target gene predictions
1
candidate regulatory elements
1
chromatin state
Annotation Category
2
Target gene links
1
cis-regulatory elements
Annotation type Category
1
ChIP-seq
1
DNase-seq
1
pCHi-C
1
snATAC-seq
Available data
3
bed bed3+
File set status
3
released
Genome assembly (visualization)
3
hg19
Organism
3
Homo sapiens
Biosample type
3
primary cell
Biosample term
2
megakaryocyte
1
stromal cell of bone marrow
Organ
125
epithelium
90
musculature of body
87
embryo
84
kidney
78
connective tissue
77
intestine
69
lung
67
brain
59
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54
bodily fluid
52
blood
51
limb
51
skin of body
48
large intestine
47
heart
41
pancreas
35
stomach
33
vasculature
29
extraembryonic component
26
blood vessel
22
small intestine
21
adrenal gland
19
mammary gland
19
penis
18
ureter
16
adipose tissue
16
liver
16
prostate gland
14
lymph node
14
placenta
13
bone element
13
esophagus
12
gonad
12
thymus
11
spleen
10
pituitary gland
9
eye
9
spinal cord
7
ovary
6
artery
6
thyroid gland
6
vein
5
lymphoid tissue
5
testis
4
breast
4
mouth
3
bone marrow
3
bronchus
3
lymphatic vessel
3
nerve
2
tongue
2
urinary bladder
2
vagina
1
skeleton
Life stage
1
unknown
Date released
September, 2022
1
February, 2021
1
January, 2021
1
May, 2020
Software used
1
chicago
1
cicero
1
encode-ccres
Lab
2
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Project
2
AMP
1
T1D
RFA
2
AMP
1
T1D
award.project!
LungMap
month_released!
September, 2022
Showing 3 of 3 results
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Download
FileSet
DSR880WUR
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE stromal cell of bone marrow
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR345BXM
released
Annotation file set
: coaccessible target genes annotation from snATAC-seq of megakaryocyte
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR992TVD
released
Annotation file set
: Target gene predictions annotation of EGAS00001001911 promoter capture Hi-C of megakaryocyte
Lab:
AMP-T2D consortium
Project:
AMP