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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
1
chromatin state
1
target gene predictions
Annotation Category
2
cis-regulatory elements
1
Target gene links
Annotation type Category
3
ChIP-seq
3
DNase-seq
Available data
3
bed bed3+
File set status
3
released
Genome assembly (visualization)
3
hg19
Organism
3
Homo sapiens
Biosample type
3
cell line
Biosample term
59
HeLa-S3
59
stomach
57
heart
50
lung
49
muscle of arm
45
brain
45
small intestine
43
adrenal gland
43
kidney
41
muscle of back
40
common myeloid progenitor, CD34-positive
40
large intestine
40
muscle of leg
40
placenta
39
A549
39
H1-hESC
39
left lung
33
right lung
33
thymus
30
right kidney
29
K562
29
hematopoietic multipotent progenitor cell
29
renal cortex interstitium
28
renal pelvis
27
left kidney
23
B cell
23
CD4-positive, alpha-beta memory T cell
22
liver
22
spleen
21
spinal cord
19
HFFc6
18
heart left ventricle
16
sigmoid colon
15
CD8-positive, alpha-beta memory T cell
15
foreskin keratinocyte
14
H9
14
MCF-7
14
psoas muscle
14
trophoblast cell
13
mononuclear cell
13
ovary
12
CD14-positive monocyte
12
body of pancreas
12
chorionic villus
12
gastrocnemius medialis
12
muscle of trunk
12
thyroid gland
12
transverse colon
11
CD4-positive, alpha-beta T cell
11
endocrine pancreas
11
heart right ventricle
10
CD8-positive, alpha-beta T cell
10
Peyer's patch
10
natural killer cell
10
neural progenitor cell
10
neurosphere
10
testis
10
upper lobe of left lung
9
GM12878
9
T-helper 1 cell
9
endothelial cell of umbilical vein
9
layer of hippocampus
9
pancreas
9
regulatory T cell
9
retina
9
skeletal muscle tissue
9
smooth muscle cell
9
tibial nerve
8
T cell
8
T-helper 17 cell
8
T-helper 2 cell
8
aorta
8
caudate nucleus
8
dermis blood vessel endothelial cell
8
esophagus squamous epithelium
8
left renal cortex interstitium
8
left renal pelvis
8
lower leg skin
8
lymphocyte
8
right renal pelvis
7
breast epithelium
7
cardiac muscle cell
7
endothelial cell
7
esophagus
7
esophagus muscularis mucosa
7
keratinocyte
7
mammary gland epithelial cell
7
neutrophil
7
parathyroid adenoma
7
right renal cortex interstitium
7
substantia nigra
7
temporal lobe
7
trophoblast
6
22Rv1
6
SK-N-DZ
6
SK-N-SH
6
WI38
6
angular gyrus
6
ascending aorta
6
bronchial epithelial cell
6
chorion membrane
6
cingulate gyrus
6
colonic mucosa
6
duodenal mucosa
6
endodermal cell
6
endometrium adenocarcinoma
6
epithelial cell of prostate
6
eye
6
fibroblast of breast
6
gastroesophageal sphincter
6
hepatocyte
6
immortal human breast epithelial cell line cell
6
mucosa of rectum
6
muscle layer of colon
6
muscle layer of duodenum
6
myoepithelial cell of mammary gland
6
naive T cell
6
naive thymus-derived CD4-positive, alpha-beta T cell
6
olfactory receptor cell
6
prostate gland
6
skeletal muscle myoblast
6
stomach smooth muscle
6
thoracic aorta
6
tongue
6
vagina
5
HCT116
5
LNCaP clone FGC
5
T47D
5
astrocyte
5
cerebellum
5
colon epithelial cell
5
coronary artery
5
foreskin melanocyte
5
kidney tubule cell
5
limb
5
mesodermal cell
5
right atrium auricular region
5
tibial artery
5
urinary bladder
4
Ammon's horn
4
Brodmann (1909) area 46
4
CyT49
4
HEK293
4
HUES8
4
HepG2
4
NAMALWA cell
4
T-cell
4
dermis lymphatic vessel endothelial cell
4
frontal cortex
4
iPSC derived cell line
4
luminal epithelial cell of mammary gland
4
lung microvascular endothelial cell
4
mesendoderm
4
muscle cell
4
neural cell
4
pancreatic delta cell
4
peripheral blood mononuclear cell
4
right cardiac atrium
4
skeletal muscle satellite cell
4
uterus
3
A172
3
A673
3
ACC112
3
ACHN
3
C4-2B
3
CD1c-positive myeloid dendritic cell
3
CMK
3
Caki2
3
DND-41
3
DOHH2
3
Daoy
3
EH
3
EL
3
ELF-1
3
ELR
3
G401
3
GM04503
3
GM04504
3
GM06990
3
GM08714
3
GM10248
3
GM10266
3
GM12864
3
GM12865
3
GM12875
3
GM18507
3
GM19238
3
GM19239
3
GM19240
3
GM23338
3
H4
3
H54
3
HAP-1
3
HL-60
3
HS-27A
3
HS-5
3
HT-29
3
HUES48
3
HUES6
3
HUES64
Organ
3
penis
Life stage
2
newborn
1
postnatal
Date released
2
September, 2022
1
February, 2021
Software used
2
r
1
encode-ccres
Lab
3
AMP-T2D consortium
Project
3
AMP
RFA
3
AMP
month_released!
May, 2021
organ_slims!
connective tissue
Showing 3 of 3 results
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Download
FileSet
DSR754CSP
released
Annotation file set
: Candidate regulatory elements for BSS00278 ELR from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR012OHZ
released
Annotation file set
: Target gene predictions for BSS00278 ELR from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR349RLP
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE ELR
Lab:
AMP-T2D consortium
Project:
AMP