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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
3
binding sites
2
candidate regulatory elements
2
histone modifications
2
target gene predictions
1
accessible chromatin
1
chromatin state
1
gene expression
Annotation Category
2
Target gene links
2
cis-regulatory elements
Annotation type Category
4
DNase-seq
3
ChIP-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
Available data
4
bed bed3+
File set status
4
released
Genome assembly (visualization)
4
hg19
Organism
4
Homo sapiens
Biosample type
4
cell line
in vitro differentiated cells
Biosample term
61
stomach
60
HeLa-S3
57
heart
50
lung
49
muscle of arm
46
small intestine
45
adrenal gland
45
brain
43
kidney
41
common myeloid progenitor, CD34-positive
41
large intestine
41
muscle of back
41
muscle of leg
41
placenta
40
A549
40
H1-hESC
39
left lung
34
thymus
33
right lung
30
K562
30
right kidney
29
renal cortex interstitium
28
renal pelvis
27
B cell
27
CD14-positive monocyte
27
left kidney
23
CD4-positive, alpha-beta memory T cell
23
liver
23
spleen
22
spinal cord
19
HFFc6
18
heart left ventricle
17
sigmoid colon
15
CD8-positive, alpha-beta memory T cell
15
H9
15
MCF-7
15
adipose tissue
15
foreskin keratinocyte
15
psoas muscle
14
natural killer cell
14
ovary
13
body of pancreas
13
gastrocnemius medialis
13
mononuclear cell
13
muscle of trunk
13
pericyte cell
13
thyroid gland
13
transverse colon
12
CD8-positive, alpha-beta T cell
12
chorionic villus
12
trophoblast cell
11
CD4-positive, alpha-beta T cell
11
endocrine pancreas
11
heart right ventricle
10
GM12878
10
Peyer's patch
10
endothelial cell
10
endothelial cell of umbilical vein
10
fibroblast of lung
10
foreskin fibroblast
10
neurosphere
10
pancreas
10
pituitary stalk
10
testis
10
upper lobe of left lung
9
T-helper 1 cell
9
layer of hippocampus
9
regulatory T cell
9
retina
9
skeletal muscle tissue
9
tibial nerve
8
T cell
8
T-helper 17 cell
8
T-helper 2 cell
8
aorta
8
breast epithelium
8
caudate nucleus
8
dermis blood vessel endothelial cell
8
esophagus squamous epithelium
8
fibroblast of dermis
8
keratinocyte
8
left renal cortex interstitium
8
left renal pelvis
8
lower leg skin
8
lymphocyte
8
right renal pelvis
8
smooth muscle cell
7
SK-N-SH
7
epithelial cell of prostate
7
esophagus
7
esophagus muscularis mucosa
7
fibroblast
7
fibroblast of cardiac tissue
7
macrophage
7
mammary gland epithelial cell
7
neutrophil
7
omental fat pad
7
parathyroid adenoma
7
right renal cortex interstitium
7
substantia nigra
7
temporal lobe
7
trophoblast
6
22Rv1
6
SK-N-DZ
6
T-cell
6
WI38
6
angular gyrus
6
ascending aorta
6
astrocyte
6
bronchial epithelial cell
6
chorion membrane
6
cingulate gyrus
6
colonic mucosa
6
coronary artery
6
duodenal mucosa
6
endometrium adenocarcinoma
6
eye
6
fibroblast of breast
6
gastroesophageal sphincter
6
immortal human breast epithelial cell line cell
6
mucosa of rectum
6
muscle layer of colon
6
muscle layer of duodenum
6
myoepithelial cell of mammary gland
6
naive T cell
6
naive thymus-derived CD4-positive, alpha-beta T cell
6
olfactory receptor cell
6
prostate gland
6
skeletal muscle myoblast
6
stomach smooth muscle
6
thoracic aorta
6
tongue
6
vagina
5
HCT116
5
HepG2
5
LNCaP clone FGC
5
T47D
5
cerebellum
5
colon epithelial cell
5
foreskin melanocyte
5
hepatocyte
5
kidney tubule cell
5
limb
5
right atrium auricular region
5
skin fibroblast
5
subcutaneous abdominal adipose tissue
5
tibial artery
5
urinary bladder
5
uterus
4
A673
4
Ammon's horn
4
Brodmann (1909) area 46
4
CyT49
4
HAP-1
4
HEK293
4
HT-29
4
HUES8
4
IMR-90
4
MM.1S
4
NAMALWA cell
4
OCI-LY7
4
PC-9
4
Panc1
4
dermis lymphatic vessel endothelial cell
4
endothelial cell of lymphatic vessel
4
frontal cortex
4
iPS DF 19.11
4
iPSC derived cell line
4
luminal epithelial cell of mammary gland
4
lung microvascular endothelial cell
4
mammary epithelial cell
4
mast cell
4
osteoblast
4
pancreatic delta cell
4
peripheral blood mononuclear cell
4
right cardiac atrium
4
skeletal muscle satellite cell
3
A172
3
ACC112
3
ACHN
3
C4-2B
3
CD1c-positive myeloid dendritic cell
3
CMK
3
Caki2
3
DND-41
3
DOHH2
3
Daoy
3
EH
3
EL
3
ELF-1
3
ELR
3
G401
3
GM04503
3
GM04504
3
GM06990
3
GM08714
3
GM10248
3
GM10266
3
GM12864
3
GM12865
Organ
4
blood
4
bodily fluid
Life stage
3
adult
Date released
2
September, 2022
1
February, 2021
1
May, 2021
Software used
2
r
1
abc
1
encode-ccres
Lab
3
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
4
AMP
RFA
4
AMP
biosample_type!
in vitro differentiated cells
Showing 4 of 4 results
table-tab-icon
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Download
FileSet
DSR834AMF
released
Annotation file set
: Candidate regulatory elements for BSS00491 HAP-1 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR765USM
released
Annotation file set
: Target gene predictions for BSS00491 HAP-1 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR930MDC
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE HAP-1
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR155AOX
released
Annotation file set
: enhancer-gene predicton of HAP1 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP