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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
7
accessible chromatin
5
target gene predictions
4
chromatin state
2
binding sites
2
gene expression
2
histone modifications
1
candidate regulatory elements
1
variant allelic effects
Annotation Category
5
Target gene links
1
cis-regulatory elements
Annotation type Category
6
DNase-seq
5
ATAC-seq
5
H3K27ac ChIP-Seq
1
ChIP-seq
Available data
6
bed bed3+
File set status
6
released
Genome assembly (visualization)
6
hg19
Organism
6
Homo sapiens
Biosample type
5
in vitro differentiated cells
1
cell line
Biosample term
54
HeLa-S3
38
H1-hESC
23
stomach
19
HFFc6
19
heart
18
CD14-positive monocyte
18
K562
18
lung
17
adrenal gland
17
muscle of arm
16
large intestine
16
small intestine
15
kidney
15
muscle of back
15
muscle of leg
13
H9
13
brain
13
left lung
13
placenta
12
thymus
11
CD8-positive, alpha-beta T cell
11
common myeloid progenitor, CD34-positive
11
renal cortex interstitium
11
right lung
11
spleen
10
pituitary stalk
10
renal pelvis
10
right kidney
9
left kidney
9
liver
9
pericyte cell
8
CD4-positive, alpha-beta T cell
8
GM12878
8
heart left ventricle
8
hematopoietic multipotent progenitor cell
8
spinal cord
7
B cell
7
endothelial cell
7
foreskin keratinocyte
7
psoas muscle
7
sigmoid colon
7
smooth muscle cell
6
dendritic cell
6
endothelial cell of umbilical vein
6
foreskin fibroblast
6
lymphocyte
6
olfactory receptor cell
6
ovary
6
pancreas
6
trophoblast cell
5
MCF-7
5
adipocyte
5
body of pancreas
5
gastrocnemius medialis
5
heart right ventricle
5
muscle of trunk
5
natural killer cell
5
subcutaneous abdominal adipose tissue
5
thyroid gland
5
transverse colon
4
A549
4
CyT49
4
HUES8
4
Peyer's patch
4
T-cell
4
aorta
4
breast epithelium
4
cardiac muscle cell
4
chorionic villus
4
dermis blood vessel endothelial cell
4
esophagus squamous epithelium
4
fibroblast
4
gastroesophageal sphincter
4
iPSC derived cell line
4
left renal cortex interstitium
4
left renal pelvis
4
lower leg skin
4
macrophage
4
mesenchymal stem cell
4
neurosphere
4
peripheral blood mononuclear cell
4
right renal pelvis
4
testis
4
upper lobe of left lung
3
HCT116
3
HepG2
3
LNCAP
3
MCF 10A
3
SK-N-SH
3
adipose tissue
3
astrocyte
3
cardiomyocytes (cardiac muscle cell)
3
colon epithelial cell
3
endocrine pancreas
3
esophagus
3
esophagus muscularis mucosa
3
fibroblast of lung
3
foreskin melanocyte
3
hepatocyte
3
keratinocyte
3
layer of hippocampus
3
mammary epithelial cell
3
mesendoderm
3
mesodermal cell
3
monocyte
3
naive thymus-derived CD4-positive, alpha-beta T cell
3
neuronal stem cell
3
omental fat pad
3
pancreatic A cell
3
pancreatic acinar cell
3
pancreatic alpha cell
3
pancreatic beta cell
3
pancreatic delta cell
3
pancreatic ductal cell
3
parathyroid adenoma
3
retina
3
right renal cortex interstitium
3
substantia nigra
3
suprapubic skin
3
temporal lobe
3
tibial nerve
3
trophoblast
3
type B pancreatic cell
3
uterus
2
A673
2
AG10803
2
Ammon's horn
2
BJAB cell
2
CD4-positive helper T cell
2
HAP-1
2
HEK293
2
HT-29
2
IMR-90
2
Jurkat
2
MCF 10A cell
2
MM.1S
2
NAMALWA
2
OCI-LY7
2
SK-N-DZ
2
T-helper 1 cell
2
THP-1
2
U937
2
activated CD4-positive, alpha-beta T cell
2
angular gyrus
2
ascending aorta
2
bipolar neuron
2
blood vessel smooth muscle cell
2
cardiac fibroblast
2
cardiac myoblast
2
cardiovascular progenitor cell
2
caudate nucleus
2
chorion
2
cingulate gyrus
2
colonic mucosa
2
coronary artery
2
cortical cell of adrenal gland
2
duodenal mucosa
2
endodermal cell
2
enteric smooth muscle cell
2
erythroblast
2
eye
2
fibroblast of breast
2
fibroblast of dermis
2
gabaergic neuron
2
glutamatergic neuron
2
iPS DF 19.11
2
luminal epithelial cell of mammary gland
2
lymphocyte of B lineage (iPSC)
2
megakaryocyte
2
memory B cell
2
middle frontal area 46
2
mucosa of rectum
2
muscle layer of colon
2
muscle layer of duodenum
2
myoepithelial cell of mammary gland
2
naive B cell
2
naive thymus-derived CD8-positive, alpha-beta T cell
2
neural cell
2
neural progenitor cell
2
neuroepithelial stem cell
2
placental basal plate
2
prostate gland
2
regulatory T cell
2
right cardiac atrium
2
skeletal muscle myoblast
2
skeletal muscle satellite cell
2
skeletal muscle tissue
2
smooth muscle cell of the esophagus
2
stomach smooth muscle
2
subcutaneous adipose tissue
2
thoracic aorta
2
tongue
2
type II pneumocyte
2
vagina
1
A172
1
ACC112
1
ACHN
1
AG04449
1
AG04450
1
AG09309
Organ
5
connective tissue
Life stage
1
adult
unknown
Date released
5
May, 2021
September, 2022
1
February, 2021
Software used
5
abc
1
encode-ccres
Lab
5
Jesse Engreitz, Stanford University
1
AMP-T2D consortium
Project
6
AMP
RFA
6
AMP
month_released!
September, 2022
relevant_life_stage!
unknown
Showing 6 of 6 results
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Download
FileSet
DSR462QHF
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE adipocyte
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR039HOA
released
Annotation file set
: enhancer-gene predicton of Adipocyte-Claussnitzer_d14 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR164LWB
released
Annotation file set
: enhancer-gene predicton of Adipocyte-Claussnitzer_d6 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR542JXE
released
Annotation file set
: enhancer-gene predicton of Adipocyte-Claussnitzer_d2 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR941KCA
released
Annotation file set
: enhancer-gene predicton of Adipocyte-Claussnitzer_d0 from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR154QOI
released
Annotation file set
: enhancer-gene predicton of LoVo from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP