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Schema
Citing CMDGA
Clear Filters
Annotation type
3
candidate regulatory elements
1
accessible chromatin
1
target gene predictions
Annotation Category
3
cis-regulatory elements
1
Target gene links
Annotation type Category
4
snATAC-seq
Available data
4
bed bed3+
File set status
4
released
Genome assembly (visualization)
4
hg19
3
GRCh38
Organism
4
Homo sapiens
Biosample type
4
primary cell
Biosample term
4
endothelial cell
4
macrophage
4
natural killer cell
3
B cell
3
endothelial cell of lymphatic vessel
3
fibroblast
3
mast cell
3
pancreatic alpha cell
3
pancreatic beta cell
3
pancreatic delta cell
2
adipocyte
2
endocardial cell
2
neuronal stem cell
2
pericyte cell
2
regular ventricular cardiac myocyte
2
smooth muscle cell
1
CD8-positive, alpha-beta T cell
1
activated CD4-positive, alpha-beta T cell
1
activated CD8-positive, alpha-beta T cell
1
cholangiocyte
1
conventional dendritic cell
1
dendritic cell
1
erythrocyte
1
hepatic stellate cell
1
hepatocyte
1
megakaryocyte
1
memory B cell
1
monocyte
1
myofibroblast cell
1
naive B cell
1
naive thymus-derived CD4-positive, alpha-beta T cell
1
naive thymus-derived CD8-positive, alpha-beta T cell
1
natural killer cell mediated cytotoxicity
1
non-classical monocyte
1
pancreatic acinar cell
1
pancreatic ductal cell
1
pancreatic polypeptide-secreting cell
1
pancreatic stellate cell
1
plasmacytoid dendritic cell
1
regulatory T cell
1
stellate neuron
Disease term
2
heart failure
1
liver disease
Life stage
3
adult
Date released
3
May, 2024
1
January, 2021
Software used
1
cicero
Lab
21
AMP-T2D consortium
4
Kyle Gaulton, UCSD
2
Jesse Engreitz, Stanford University
1
Bing Ren, UCSD
Project
3
AMP
1
T1D
RFA
3
AMP2
1
T1D
Showing 4 of 4 results
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Download
FileSet
DSR460NJI
released
Annotation file set
: Candidate cis-Regulatory Elements (cCREs) of macrophage derived from liver snATAC-seq
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR231ITI
released
Annotation file set
: Candidate cis-Regulatory Elements (cCREs) of macrophage derived from RV snATAC-seq
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR987KAF
released
Annotation file set
: Candidate cis-Regulatory Elements (cCREs) of macrophage derived from LV snATAC-seq
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR104LZJ
released
Annotation file set
: coaccessible target genes annotation from snATAC-seq of pancreatic_macrophage
Lab:
Kyle Gaulton, UCSD
Project:
T1D