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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
1
accessible chromatin
1
binding sites
1
chromatin state
1
target gene predictions
Annotation Category
2
cis-regulatory elements
1
Target gene links
Annotation type Category
3
ChIP-seq
3
DNase-seq
Available data
3
bed bed3+
File set status
3
released
Genome assembly (visualization)
3
hg19
Organism
3
Homo sapiens
Biosample type
3
cell line
Biosample term
61
stomach
60
HeLa-S3
57
heart
50
lung
49
muscle of arm
46
small intestine
45
adrenal gland
45
brain
43
kidney
41
large intestine
41
muscle of back
41
muscle of leg
41
placenta
40
A549
40
H1-hESC
39
left lung
34
thymus
33
right lung
30
K562
30
right kidney
29
hematopoietic multipotent progenitor cell
29
renal cortex interstitium
28
renal pelvis
27
left kidney
23
liver
23
spleen
22
spinal cord
19
HFFc6
18
heart left ventricle
17
sigmoid colon
15
H9
15
MCF-7
15
adipose tissue
15
psoas muscle
14
ovary
13
body of pancreas
13
gastrocnemius medialis
13
muscle of trunk
13
thyroid gland
13
transverse colon
12
chorionic villus
11
endocrine pancreas
11
heart right ventricle
10
GM12878
10
Peyer's patch
10
adipocyte
10
neural progenitor cell
10
pancreas
10
pituitary stalk
10
testis
10
upper lobe of left lung
9
layer of hippocampus
9
retina
9
skeletal muscle tissue
9
tibial nerve
8
aorta
8
breast epithelium
8
caudate nucleus
8
esophagus squamous epithelium
8
left renal cortex interstitium
8
left renal pelvis
8
lower leg skin
8
lymphocyte
8
right renal pelvis
7
SK-N-SH
7
esophagus
7
esophagus muscularis mucosa
7
mesenchymal stem cell
7
omental fat pad
7
parathyroid adenoma
7
right renal cortex interstitium
7
substantia nigra
7
temporal lobe
7
trophoblast
6
22Rv1
6
SK-N-DZ
6
WI38
6
angular gyrus
6
ascending aorta
6
chorion membrane
6
cingulate gyrus
6
colonic mucosa
6
coronary artery
6
dendritic cell
6
duodenal mucosa
6
endodermal cell
6
endometrium adenocarcinoma
6
eye
6
gastroesophageal sphincter
6
immortal human breast epithelial cell line cell
6
mucosa of rectum
6
muscle layer of colon
6
muscle layer of duodenum
6
prostate gland
6
stomach smooth muscle
6
thoracic aorta
6
tongue
6
vagina
5
HCT116
5
HepG2
5
LNCaP clone FGC
5
T47D
5
cardiac muscle cell
5
cerebellum
5
limb
5
mesendoderm
5
mesodermal cell
right atrium auricular region
5
subcutaneous abdominal adipose tissue
5
tibial artery
5
urinary bladder
5
uterus
4
A673
4
Ammon's horn
4
Brodmann (1909) area 46
4
CyT49
4
HAP-1
4
HEK293
4
HT-29
4
HUES8
4
IMR-90
4
MM.1S
4
NAMALWA cell
4
OCI-LY7
4
PC-9
4
Panc1
4
bipolar neuron
4
frontal cortex
4
iPS DF 19.11
4
iPSC derived cell line
4
muscle cell
4
neural cell
4
right cardiac atrium
4
trophoblast cell
3
A172
3
ACC112
3
ACHN
3
C4-2B
3
CMK
3
Caki2
3
DND-41
3
DOHH2
3
Daoy
3
EH
3
EL
3
ELF-1
3
ELR
3
G401
3
GM04503
3
GM04504
3
GM06990
3
GM08714
3
GM10248
3
GM10266
3
GM12864
3
GM12865
3
GM12875
3
GM18507
3
GM19238
3
GM19239
3
GM19240
3
GM23248
3
GM23338
3
H4
3
H54
3
H7-hESC
3
HL-60
3
HS-27A
3
HS-5
3
HT1080
3
HUES48
3
HUES6
3
HUES64
3
KARPAS-422 cell
3
KBM-7
3
KMS-11
3
KOPT-K1
3
L1-S8
3
LHCN-M2
3
LNCAP
3
LoVo cell
3
Loucy
3
M059J
3
MCF 10A
3
MG63
3
NB4
3
NCI-H929
3
OCI-LY1
3
OCI-LY3
3
PC-3
3
RCC 7860
3
RPMI7951
3
RPMI8226
3
RWPE1
3
RWPE2
3
SJCRH30
3
SJSA1
3
SK-MEL-5
3
SK-N-MC
3
SU-DHL-6
Disease term
2
osteosarcoma
Organ
3
bone element
Life stage
3
adult
Date released
2
September, 2022
1
February, 2021
Software used
2
r
1
encode-ccres
Lab
3
AMP-T2D consortium
Project
3
AMP
RFA
3
AMP
biosample_term_name!
right atrium auricular region
biosample_type!
primary cell
Showing 3 of 3 results
table-tab-icon
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Download
FileSet
DSR499PBK
released
Annotation file set
: Candidate regulatory elements for BSS01550 SJSA1 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR544XUG
released
Annotation file set
: Target gene predictions for BSS01550 SJSA1 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR635ZHO
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE SJSA1
Lab:
AMP-T2D consortium
Project:
AMP