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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
7
chromatin state
6
accessible chromatin
4
target gene predictions
2
candidate regulatory elements
1
binding sites
1
gene expression
Annotation Category
4
Target gene links
2
cis-regulatory elements
Annotation type Category
5
DNase-seq
4
ChIP-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
6
bed bed3+
File set status
6
released
Genome assembly (visualization)
6
hg19
Organism
6
Homo sapiens
Biosample type
5
cell line
1
in vitro differentiated cells
Biosample term
58
HeLa-S3
40
H1-hESC
40
stomach
39
heart
37
A549
33
lung
32
brain
32
muscle of arm
32
small intestine
31
adrenal gland
29
K562
29
placenta
28
kidney
27
common myeloid progenitor, CD34-positive
27
large intestine
27
muscle of leg
26
left lung
26
muscle of back
25
thymus
23
CD14-positive monocyte
22
right lung
20
hematopoietic multipotent progenitor cell
20
right kidney
19
B cell
19
HFFc6
18
CD4-positive, alpha-beta memory T cell
18
left kidney
18
renal cortex interstitium
18
renal pelvis
17
liver
15
spinal cord
14
CD8-positive, alpha-beta memory T cell
14
spleen
12
heart left ventricle
12
mononuclear cell
12
psoas muscle
12
sigmoid colon
12
trophoblast cell
11
MCF-7
10
ovary
10
pituitary stalk
9
GM12878
9
H9
9
body of pancreas
9
gastrocnemius medialis
9
muscle of trunk
9
neural progenitor cell
9
thyroid gland
9
transverse colon
8
T cell
8
chorionic villus
8
endocrine pancreas
8
foreskin keratinocyte
8
heart right ventricle
8
lymphocyte
8
natural killer cell
8
smooth muscle cell
7
endothelial cell
7
keratinocyte
7
mammary gland epithelial cell
7
pancreas
7
regulatory T cell
6
Peyer's patch
6
T-helper 1 cell
6
T-helper 17 cell
6
T-helper 2 cell
6
aorta
6
caudate nucleus
6
chorion membrane
6
dendritic cell
6
endometrium adenocarcinoma
6
endothelial cell of umbilical vein
6
hepatocyte
6
immortal human breast epithelial cell line cell
6
layer of hippocampus
6
naive T cell
6
neurosphere
6
olfactory receptor cell
6
retina
6
skeletal muscle tissue
6
testis
6
tibial nerve
6
upper lobe of left lung
5
CD8-positive, alpha-beta T cell
5
SK-N-SH
5
astrocyte
5
breast epithelium
5
colon epithelial cell
5
coronary artery
5
epithelial cell of prostate
5
esophagus
5
neutrophil
5
skeletal muscle myoblast
5
trophoblast
4
22Rv1
4
Brodmann (1909) area 46
4
CyT49
4
HCT116
4
HUES8
4
HepG2
4
LNCaP clone FGC
4
NAMALWA cell
4
SK-N-DZ
4
T47D
4
angular gyrus
4
ascending aorta
4
bronchial epithelial cell
4
cerebellum
4
cingulate gyrus
4
colonic mucosa
4
dermis blood vessel endothelial cell
4
dermis lymphatic vessel endothelial cell
4
duodenal mucosa
4
endodermal cell
4
esophagus muscularis mucosa
4
esophagus squamous epithelium
4
eye
4
fibroblast of breast
4
frontal cortex
4
iPSC derived cell line
4
kidney tubule cell
4
left renal cortex interstitium
4
left renal pelvis
4
limb
4
lower leg skin
4
luminal epithelial cell of mammary gland
4
macrophage
4
mesendoderm
4
mucosa of rectum
4
muscle cell
4
muscle layer of colon
4
muscle layer of duodenum
4
myoepithelial cell of mammary gland
4
pancreatic delta cell
4
parathyroid adenoma
4
prostate gland
4
right atrium auricular region
4
right renal cortex interstitium
4
right renal pelvis
4
stomach smooth muscle
4
substantia nigra
4
temporal lobe
4
thoracic aorta
4
tibial artery
4
tongue
4
urinary bladder
4
vagina
3
A673
3
Ammon's horn
3
CD4-positive, alpha-beta T cell
3
GM18507
3
GM19238
3
GM19239
3
GM19240
3
H7-hESC
3
HAP-1
3
HT-29
3
IMR-90
3
KARPAS-422 cell
3
LoVo cell
3
MM.1S
3
OCI-LY7
3
PC-9
3
Panc1
3
bipolar neuron
3
cardiac muscle cell
3
cardiomyocytes (cardiac muscle cell)
3
iPS DF 19.11
3
monocyte
3
pancreatic A cell
3
pancreatic acinar cell
3
pancreatic ductal cell
3
right cardiac atrium
3
skeletal muscle satellite cell
3
type B pancreatic cell
3
uterus
2
8988T
2
A172
2
ACC112
2
ACHN
2
AG04449 cell
2
AG04450 cell
2
AG08395 cell
2
AG08396 cell
2
AG09309 cell
2
AG09319 cell
2
AG10803 cell
2
AG20443
2
BE(2)-C
2
BJ cell
2
BJAB cell
2
C4-2B
2
CD1c-positive myeloid dendritic cell
2
CD4-positive helper T cell
2
CMK
2
COLO829
2
CWRU1
2
Caco-2 cell
2
Caki2
2
DND-41
Disease term
4
neuroblastoma
Organ
5
brain
Life stage
4
child
Date released
4
September, 2022
February, 2021
1
March, 2020
1
May, 2021
Software used
4
r
1
abc
1
nospecificsoft_customcode
Lab
5
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
6
AMP
RFA
6
AMP
month_released!
February, 2021
organ_slims!
connective tissue
Showing 6 of 6 results
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Download
FileSet
DSR277GGH
released
Annotation file set
: Candidate regulatory elements for BSS01571 SK-N-SH from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR410LTV
released
Annotation file set
: Candidate regulatory elements for BSS01562 SK-N-SH from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR237PDC
released
Annotation file set
: Target gene predictions for BSS01571 SK-N-SH from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR022HYM
released
Annotation file set
: Target gene predictions for BSS01562 SK-N-SH from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR266GVV
released
Annotation file set
: enhancer-gene predicton of SK-N-SH-ENCODE from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR929DUM
released
Annotation file set
: A target gene prediction annotation in Human Human ES Cells of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP