Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
2
target gene predictions
1
chromatin state
Annotation Category
2
Target gene links
2
cis-regulatory elements
Annotation type Category
4
DNase-seq
3
ChIP-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
Available data
4
bed bed3+
File set status
4
released
Genome assembly (visualization)
4
hg19
Organism
4
Homo sapiens
Biosample type
primary cell
4
cell line
Biosample term
61
stomach
60
HeLa-S3
57
heart
50
lung
49
muscle of arm
46
small intestine
45
adrenal gland
45
brain
43
kidney
41
large intestine
41
muscle of back
41
muscle of leg
41
placenta
40
A549
40
H1-hESC
39
left lung
34
thymus
33
right lung
30
K562
30
right kidney
29
hematopoietic multipotent progenitor cell
29
renal cortex interstitium
28
renal pelvis
27
left kidney
23
liver
23
spleen
22
spinal cord
19
HFFc6
18
heart left ventricle
17
sigmoid colon
15
H9
15
MCF-7
15
adipose tissue
15
psoas muscle
14
ovary
13
body of pancreas
13
gastrocnemius medialis
13
muscle of trunk
13
thyroid gland
13
transverse colon
12
chorionic villus
11
endocrine pancreas
11
heart right ventricle
10
GM12878
10
Peyer's patch
10
adipocyte
10
neural progenitor cell
10
pancreas
10
pituitary stalk
10
testis
10
upper lobe of left lung
9
layer of hippocampus
9
retina
9
skeletal muscle tissue
9
tibial nerve
8
aorta
8
breast epithelium
8
caudate nucleus
8
esophagus squamous epithelium
8
left renal cortex interstitium
8
left renal pelvis
8
lower leg skin
8
lymphocyte
8
right renal pelvis
7
SK-N-SH
7
esophagus
7
esophagus muscularis mucosa
7
mesenchymal stem cell
7
omental fat pad
7
parathyroid adenoma
7
right renal cortex interstitium
7
substantia nigra
7
temporal lobe
7
trophoblast
6
22Rv1
6
SK-N-DZ
6
WI38
6
angular gyrus
6
ascending aorta
6
chorion membrane
6
cingulate gyrus
6
colonic mucosa
6
coronary artery
6
dendritic cell
6
duodenal mucosa
6
endodermal cell
6
endometrium adenocarcinoma
6
eye
6
gastroesophageal sphincter
6
immortal human breast epithelial cell line cell
6
mucosa of rectum
6
muscle layer of colon
6
muscle layer of duodenum
6
prostate gland
6
stomach smooth muscle
6
thoracic aorta
6
tongue
6
vagina
5
HCT116
5
HepG2
5
LNCaP clone FGC
5
T47D
5
cardiac muscle cell
5
cerebellum
5
limb
5
mesendoderm
5
mesodermal cell
5
right atrium auricular region
5
subcutaneous abdominal adipose tissue
5
tibial artery
5
urinary bladder
5
uterus
4
A673
4
Ammon's horn
4
Brodmann (1909) area 46
4
CyT49
4
HAP-1
4
HEK293
4
HT-29
4
HUES8
4
IMR-90
4
MM.1S
4
NAMALWA cell
4
OCI-LY7
4
PC-9
4
Panc1
4
bipolar neuron
4
frontal cortex
4
iPS DF 19.11
4
iPSC derived cell line
4
muscle cell
4
neural cell
4
right cardiac atrium
4
trophoblast cell
3
A172
3
ACC112
3
ACHN
3
C4-2B
3
CMK
3
Caki2
3
DND-41
3
DOHH2
3
Daoy
3
EH
3
EL
3
ELF-1
3
ELR
3
G401
3
GM04503
3
GM04504
3
GM06990
3
GM08714
3
GM10248
3
GM10266
3
GM12864
3
GM12865
3
GM12875
3
GM18507
3
GM19238
3
GM19239
3
GM19240
3
GM23248
3
GM23338
3
H4
3
H54
3
H7-hESC
3
HL-60
3
HS-27A
3
HS-5
3
HT1080
3
HUES48
3
HUES6
3
HUES64
3
KARPAS-422 cell
3
KBM-7
3
KMS-11
3
KOPT-K1
3
L1-S8
3
LHCN-M2
3
LNCAP
3
LoVo cell
3
Loucy
3
M059J
3
MCF 10A
3
MG63
3
NB4
3
NCI-H929
3
OCI-LY1
3
OCI-LY3
3
PC-3
3
RCC 7860
3
RPMI7951
3
RPMI8226
3
RWPE1
3
RWPE2
3
SJCRH30
3
SJSA1
3
SK-MEL-5
3
SK-N-MC
3
SU-DHL-6
Organ
4
skin of body
Life stage
2
newborn
1
postnatal
Date released
2
September, 2022
1
February, 2021
1
May, 2021
Software used
2
r
1
abc
1
encode-ccres
Lab
3
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
4
AMP
RFA
4
AMP
biosample_term_name!
natural killer cell
biosample_type!
primary cell
Showing 4 of 4 results
table-tab-icon
matrix-icon
Download
FileSet
DSR895SKI
released
Annotation file set
: Candidate regulatory elements for BSS00731 iPS DF 19.11 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR985UCV
released
Annotation file set
: Target gene predictions for BSS00731 iPS DF 19.11 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR584ZJC
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE iPS DF 19.11
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR544HLF
released
Annotation file set
: enhancer-gene predicton of iPS_DF_19.11_Cell_Line-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP