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Schema
Citing CMDGA
Clear Filters
Annotation type
4
binding sites
3
candidate regulatory elements
3
histone modifications
1
accessible chromatin
1
chromatin state
1
target gene predictions
Annotation Category
3
cis-regulatory elements
1
Target gene links
Annotation type Category
4
DNase-seq
3
ChIP-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
Available data
4
bed bed3+
File set status
4
released
Genome assembly (visualization)
4
hg19
Organism
4
Homo sapiens
Biosample type
4
primary cell
Biosample term
61
stomach
60
HeLa-S3
57
heart
50
lung
49
muscle of arm
46
small intestine
45
adrenal gland
45
brain
43
kidney
41
common myeloid progenitor, CD34-positive
41
large intestine
41
muscle of back
41
muscle of leg
41
placenta
40
A549
40
H1-hESC
39
left lung
34
thymus
33
right lung
30
K562
30
right kidney
29
hematopoietic multipotent progenitor cell
29
renal cortex interstitium
28
renal pelvis
27
CD14-positive monocyte
27
left kidney
24
B cell
23
CD4-positive, alpha-beta memory T cell
23
liver
23
spleen
22
spinal cord
19
HFFc6
18
heart left ventricle
17
sigmoid colon
16
trophoblast cell
15
CD8-positive, alpha-beta memory T cell
15
H9
15
MCF-7
15
adipose tissue
15
psoas muscle
14
ovary
13
body of pancreas
13
gastrocnemius medialis
13
mononuclear cell
13
muscle of trunk
13
thyroid gland
13
transverse colon
12
CD8-positive, alpha-beta T cell
12
chorionic villus
11
CD4-positive, alpha-beta T cell
11
endocrine pancreas
11
heart right ventricle
11
natural killer cell
11
pericyte cell
10
GM12878
10
Peyer's patch
10
adipocyte
10
endothelial cell of umbilical vein
10
fibroblast of lung
10
neural progenitor cell
10
neurosphere
10
pancreas
10
pituitary stalk
10
testis
10
upper lobe of left lung
9
T-helper 1 cell
9
layer of hippocampus
9
regulatory T cell
9
retina
9
skeletal muscle tissue
9
smooth muscle cell
9
tibial nerve
8
T cell
8
T-helper 17 cell
8
T-helper 2 cell
8
aorta
8
breast epithelium
8
cardiac muscle cell
8
caudate nucleus
8
esophagus squamous epithelium
8
left renal cortex interstitium
8
left renal pelvis
8
lymphocyte
8
mesenchymal stem cell
8
right renal pelvis
7
SK-N-SH
7
endothelial cell
7
epithelial cell of prostate
7
esophagus
7
esophagus muscularis mucosa
7
fibroblast of cardiac tissue
7
hepatocyte
7
mammary gland epithelial cell
7
neutrophil
7
omental fat pad
7
parathyroid adenoma
7
right renal cortex interstitium
7
skeletal muscle myoblast
7
substantia nigra
7
temporal lobe
7
trophoblast
6
22Rv1
6
SK-N-DZ
6
T-cell
6
WI38
6
angular gyrus
6
ascending aorta
6
astrocyte
6
bronchial epithelial cell
6
chorion membrane
6
cingulate gyrus
6
colonic mucosa
6
coronary artery
6
dendritic cell
6
duodenal mucosa
6
endodermal cell
6
endometrium adenocarcinoma
6
eye
6
fibroblast of breast
6
gastroesophageal sphincter
6
immortal human breast epithelial cell line cell
6
mucosa of rectum
6
muscle layer of colon
6
muscle layer of duodenum
6
myoepithelial cell of mammary gland
6
naive T cell
6
naive thymus-derived CD4-positive, alpha-beta T cell
6
olfactory receptor cell
6
prostate gland
6
stomach smooth muscle
6
thoracic aorta
6
tongue
6
vagina
5
HCT116
5
HepG2
5
LNCaP clone FGC
5
T47D
5
cerebellum
5
colon epithelial cell
5
foreskin melanocyte
5
kidney tubule cell
5
limb
5
mesendoderm
5
mesodermal cell
5
right atrium auricular region
5
subcutaneous abdominal adipose tissue
5
tibial artery
5
urinary bladder
5
uterus
4
A673
4
Ammon's horn
4
Brodmann (1909) area 46
4
CyT49
4
HAP-1
4
HEK293
4
HT-29
4
HUES8
4
IMR-90
4
MM.1S
4
NAMALWA cell
4
OCI-LY7
4
PC-9
4
Panc1
4
bipolar neuron
4
fibroblast
4
frontal cortex
4
iPSC derived cell line
4
luminal epithelial cell of mammary gland
4
lung microvascular endothelial cell
4
macrophage
4
mammary epithelial cell
4
muscle cell
4
neural cell
4
osteoblast
4
pancreatic delta cell
4
peripheral blood mononuclear cell
4
right cardiac atrium
4
skeletal muscle satellite cell
3
A172
3
ACC112
3
ACHN
3
C4-2B
3
CD1c-positive myeloid dendritic cell
3
CMK
3
Caki2
3
DND-41
3
DOHH2
3
Daoy
3
EH
3
EL
3
ELF-1
3
ELR
3
G401
3
GM04503
3
GM04504
3
GM06990
3
GM08714
3
GM10248
3
GM10266
3
GM12864
Organ
4
epithelium
4
mammary gland
Life stage
2
adult
1
unknown
Date released
3
February, 2021
1
May, 2021
Software used
3
encode-ccres
1
abc
Lab
3
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
4
AMP
RFA
4
AMP
biosample_term_name!
GM19239
organ_slims!
skin of body
Showing 4 of 4 results
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Download
FileSet
DSR668JHJ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE mammary epithelial cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR886OMF
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE mammary epithelial cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR746CTQ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE mammary epithelial cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR379EHB
released
Annotation file set
: enhancer-gene predicton of mammary_epithelial_cell-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP