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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
4
target gene predictions
3
accessible chromatin
3
chromatin state
2
candidate regulatory elements
1
binding sites
1
caQTL
1
eQTL
1
gene expression
1
histone modifications
Annotation Category
4
Target gene links
2
cis-regulatory elements
Annotation type Category
5
DNase-seq
4
ChIP-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
6
bed bed3+
File set status
6
released
Genome assembly (visualization)
6
hg19
Organism
6
Homo sapiens
Biosample type
5
in vitro differentiated cells
1
stem cell
Biosample term
58
HeLa-S3
40
H1-hESC
40
stomach
39
heart
37
A549
33
lung
32
brain
32
muscle of arm
32
small intestine
31
adrenal gland
29
K562
29
placenta
28
kidney
27
common myeloid progenitor, CD34-positive
27
large intestine
27
muscle of leg
26
left lung
26
muscle of back
25
thymus
23
CD14-positive monocyte
22
right lung
20
hematopoietic multipotent progenitor cell
20
right kidney
19
HFFc6
18
B cell
CD4-positive, alpha-beta memory T cell
18
left kidney
18
renal cortex interstitium
18
renal pelvis
17
liver
15
spinal cord
14
CD8-positive, alpha-beta memory T cell
14
adipose tissue
14
spleen
12
heart left ventricle
12
mononuclear cell
12
psoas muscle
12
sigmoid colon
12
trophoblast cell
11
MCF-7
11
pericyte cell
10
ovary
10
pituitary stalk
9
GM12878
9
H9
9
body of pancreas
9
gastrocnemius medialis
9
muscle of trunk
9
neural progenitor cell
9
thyroid gland
9
transverse colon
8
T cell
8
adipocyte
8
chorionic villus
8
endocrine pancreas
8
foreskin keratinocyte
8
heart right ventricle
8
lymphocyte
8
natural killer cell
8
smooth muscle cell
7
endothelial cell
7
fibroblast of cardiac tissue
7
fibroblast of dermis
7
fibroblast of lung
7
keratinocyte
7
mammary gland epithelial cell
7
pancreas
7
regulatory T cell
6
Peyer's patch
6
T-helper 1 cell
6
T-helper 17 cell
6
T-helper 2 cell
6
aorta
6
caudate nucleus
6
chorion membrane
6
dendritic cell
6
endometrium adenocarcinoma
6
endothelial cell of umbilical vein
6
hepatocyte
6
immortal human breast epithelial cell line cell
6
layer of hippocampus
6
mesenchymal stem cell
6
naive T cell
6
neurosphere
6
olfactory receptor cell
6
retina
6
skeletal muscle tissue
6
testis
6
tibial nerve
6
upper lobe of left lung
5
CD8-positive, alpha-beta T cell
5
SK-N-SH
5
astrocyte
5
breast epithelium
5
colon epithelial cell
5
coronary artery
5
epithelial cell of prostate
5
esophagus
5
foreskin fibroblast
5
neutrophil
5
skeletal muscle myoblast
5
skin fibroblast
5
trophoblast
4
22Rv1
4
Brodmann (1909) area 46
4
CyT49
4
HCT116
4
HUES8
4
HepG2
4
LNCaP clone FGC
4
NAMALWA cell
4
SK-N-DZ
4
T47D
4
angular gyrus
4
ascending aorta
4
bronchial epithelial cell
4
cerebellum
4
cingulate gyrus
4
colonic mucosa
4
dermis blood vessel endothelial cell
4
dermis lymphatic vessel endothelial cell
4
duodenal mucosa
4
endodermal cell
4
esophagus muscularis mucosa
4
esophagus squamous epithelium
4
eye
4
fibroblast
4
fibroblast of breast
4
frontal cortex
4
iPSC derived cell line
4
kidney tubule cell
4
left renal cortex interstitium
4
left renal pelvis
4
limb
4
lower leg skin
4
luminal epithelial cell of mammary gland
4
macrophage
4
mesendoderm
4
mucosa of rectum
4
muscle cell
4
muscle layer of colon
4
muscle layer of duodenum
4
myoepithelial cell of mammary gland
4
omental fat pad
4
pancreatic delta cell
4
parathyroid adenoma
4
prostate gland
4
right atrium auricular region
4
right renal cortex interstitium
4
right renal pelvis
4
stomach smooth muscle
4
substantia nigra
4
temporal lobe
4
thoracic aorta
4
tibial artery
4
tongue
4
urinary bladder
4
vagina
3
A673
3
Ammon's horn
3
CD4-positive, alpha-beta T cell
3
GM18507
3
GM19238
3
GM19239
3
GM19240
3
H7-hESC
3
HAP-1
3
HT-29
3
IMR-90
3
KARPAS-422 cell
3
LoVo cell
3
MM.1S
3
OCI-LY7
3
PC-9
3
Panc1
3
bipolar neuron
3
cardiac muscle cell
3
cardiomyocytes (cardiac muscle cell)
3
iPS DF 19.11
3
monocyte
3
osteoblast
3
pancreatic A cell
3
pancreatic acinar cell
3
pancreatic alpha cell
3
pancreatic beta cell
3
pancreatic ductal cell
3
right cardiac atrium
3
skeletal muscle satellite cell
3
type B pancreatic cell
3
uterus
2
8988T
2
A172
2
ACC112
2
ACHN
2
AG04449 cell
2
AG04450 cell
2
AG08395 cell
2
AG08396 cell
2
AG09309 cell
2
AG09319 cell
Organ
6
connective tissue
Life stage
2
adult
2
embryonic
Date released
4
September, 2022
1
March, 2020
1
May, 2021
Software used
4
r
encode-ccres
1
abc
1
nospecificsoft_customcode
Lab
5
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
6
AMP
RFA
6
AMP
biosample_term_name!
CD4-positive, alpha-beta memory T cell
T-cell
software_used.software.name!
encode-ccres
Showing 6 of 6 results
table-tab-icon
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Download
FileSet
DSR902OPF
released
Annotation file set
: Candidate regulatory elements for BSS01261 mesenchymal stem cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR329XEJ
released
Annotation file set
: Candidate regulatory elements for BSS01260 mesenchymal stem cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR607MNF
released
Annotation file set
: Target gene predictions for BSS01261 mesenchymal stem cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR391CWH
released
Annotation file set
: Target gene predictions for BSS01260 mesenchymal stem cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR170XIW
released
Annotation file set
: enhancer-gene predicton of H1_Derived_Mesenchymal_Stem_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR333DPA
released
Annotation file set
: A target gene prediction annotation in Human Mesenchymal Stem Cell of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP