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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
3
accessible chromatin
3
target gene predictions
2
candidate regulatory elements
2
chromatin state
1
binding sites
1
caQTL
1
eQTL
1
gene expression
1
histone modifications
Annotation Category
3
Target gene links
2
cis-regulatory elements
Annotation type Category
4
DNase-seq
3
ChIP-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
5
bed bed3+
File set status
5
released
Genome assembly (visualization)
5
hg19
Organism
5
Homo sapiens
Biosample type
3
in vitro differentiated cells
1
primary cell
1
stem cell
Biosample term
60
HeLa-S3
41
common myeloid progenitor, CD34-positive
40
A549
38
H1-hESC
30
K562
29
hematopoietic multipotent progenitor cell
27
CD14-positive monocyte
24
B cell
23
CD4-positive, alpha-beta memory T cell
21
adrenal gland
21
stomach
20
spleen
19
HFFc6
18
liver
17
sigmoid colon
15
CD8-positive, alpha-beta memory T cell
15
MCF-7
15
adipose tissue
15
foreskin keratinocyte
15
psoas muscle
13
body of pancreas
13
gastrocnemius medialis
13
mononuclear cell
13
thyroid gland
13
transverse colon
12
CD8-positive, alpha-beta T cell
12
heart left ventricle
11
CD4-positive, alpha-beta T cell
11
endocrine pancreas
11
natural killer cell
11
ovary
11
pericyte cell
11
small intestine
10
GM12878
10
Peyer's patch
10
adipocyte
10
endothelial cell of umbilical vein
10
fibroblast of lung
10
foreskin fibroblast
10
pancreas
10
pituitary stalk
10
upper lobe of left lung
9
T-helper 1 cell
9
layer of hippocampus
9
regulatory T cell
9
skeletal muscle tissue
9
tibial nerve
8
T cell
8
T-helper 17 cell
8
T-helper 2 cell
8
aorta
8
breast epithelium
8
caudate nucleus
8
dermis blood vessel endothelial cell
8
esophagus squamous epithelium
8
fibroblast of dermis
8
heart right ventricle
8
keratinocyte
8
lower leg skin
8
lung
8
lymphocyte
7
H9
7
SK-N-SH
7
endothelial cell
7
epithelial cell of prostate
7
esophagus
7
esophagus muscularis mucosa
7
mammary gland epithelial cell
7
neutrophil
7
omental fat pad
7
parathyroid adenoma
7
skeletal muscle myoblast
7
substantia nigra
7
temporal lobe
6
22Rv1
6
SK-N-DZ
6
T-cell
6
WI38
6
angular gyrus
6
ascending aorta
6
astrocyte
6
bronchial epithelial cell
6
cingulate gyrus
6
colonic mucosa
6
coronary artery
6
dendritic cell
6
duodenal mucosa
6
endometrium adenocarcinoma
6
fibroblast of breast
6
gastroesophageal sphincter
6
heart
6
immortal human breast epithelial cell line cell
6
kidney
6
mucosa of rectum
6
muscle layer of colon
6
muscle layer of duodenum
6
myoepithelial cell of mammary gland
6
naive T cell
6
naive thymus-derived CD4-positive, alpha-beta T cell
6
olfactory receptor cell
6
prostate gland
smooth muscle cell
6
stomach smooth muscle
6
testis
6
thoracic aorta
6
thymus
6
vagina
5
HCT116
5
HepG2
5
LNCaP clone FGC
5
T47D
5
cerebellum
5
colon epithelial cell
5
fibroblast of cardiac tissue
5
foreskin melanocyte
5
kidney tubule cell
5
mesenchymal stem cell
5
right atrium auricular region
5
subcutaneous abdominal adipose tissue
5
tibial artery
5
uterus
4
A673
4
Ammon's horn
4
Brodmann (1909) area 46
4
CyT49
4
HAP-1
4
HT-29
4
HUES8
4
MM.1S
4
NAMALWA cell
4
OCI-LY7
4
PC-9
4
Panc1
4
bipolar neuron
4
dermis lymphatic vessel endothelial cell
4
fibroblast
4
frontal cortex
hepatocyte
4
iPS DF 19.11
4
iPSC derived cell line
4
luminal epithelial cell of mammary gland
4
lung microvascular endothelial cell
4
macrophage
4
mammary epithelial cell
4
muscle cell
4
osteoblast
4
pancreatic delta cell
4
peripheral blood mononuclear cell
4
right cardiac atrium
4
skeletal muscle satellite cell
3
A172
3
ACC112
3
ACHN
3
C4-2B
3
CD1c-positive myeloid dendritic cell
3
CMK
3
Caki2
3
DND-41
3
DOHH2
3
Daoy
3
EH
3
EL
3
ELR
3
G401
3
GM04503
3
GM04504
3
GM06990
3
GM08714
3
GM10248
3
GM10266
3
GM12864
3
GM12865
3
GM12875
3
GM18507
3
GM19238
3
GM19239
3
GM19240
3
GM23248
3
GM23338
3
H4
3
H54
3
HL-60
3
HS-27A
3
HS-5
3
HT1080
3
KARPAS-422 cell
3
KBM-7
3
KMS-11
3
KOPT-K1
3
L1-S8
3
LHCN-M2
3
LNCAP
3
LoVo cell
3
Loucy
3
M059J
3
MCF 10A
3
MG63
3
NB4
3
NCI-H929
3
OCI-LY1
Organ
5
connective tissue
Life stage
3
adult
embryonic
Date released
2
September, 2022
1
February, 2021
1
March, 2020
1
May, 2021
Software used
2
r
1
abc
1
encode-ccres
1
nospecificsoft_customcode
Lab
4
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
5
AMP
RFA
5
AMP
biosample_term_name!
hepatocyte
smooth muscle cell
relevant_life_stage!
embryonic
Showing 5 of 5 results
table-tab-icon
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Download
FileSet
DSR329XEJ
released
Annotation file set
: Candidate regulatory elements for BSS01260 mesenchymal stem cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR391CWH
released
Annotation file set
: Target gene predictions for BSS01260 mesenchymal stem cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR627LDJ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE mesenchymal stem cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR170XIW
released
Annotation file set
: enhancer-gene predicton of H1_Derived_Mesenchymal_Stem_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR333DPA
released
Annotation file set
: A target gene prediction annotation in Human Mesenchymal Stem Cell of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP