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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
4
candidate regulatory elements
4
target gene predictions
3
accessible chromatin
3
chromatin state
1
binding sites
1
caQTL
1
eQTL
1
gene expression
1
histone modifications
Annotation Category
4
Target gene links
4
cis-regulatory elements
Annotation type Category
7
DNase-seq
6
ChIP-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
8
bed bed3+
File set status
8
released
Genome assembly (visualization)
8
hg19
Organism
8
Homo sapiens
Biosample type
6
in vitro differentiated cells
1
primary cell
1
stem cell
Biosample term
61
stomach
60
HeLa-S3
57
heart
50
lung
49
muscle of arm
46
small intestine
45
adrenal gland
45
brain
43
kidney
41
common myeloid progenitor, CD34-positive
41
large intestine
41
muscle of back
41
muscle of leg
41
placenta
40
A549
40
H1-hESC
39
left lung
34
thymus
33
right lung
30
K562
30
right kidney
29
hematopoietic multipotent progenitor cell
29
renal cortex interstitium
28
renal pelvis
27
B cell
27
CD14-positive monocyte
27
left kidney
23
CD4-positive, alpha-beta memory T cell
23
liver
23
spleen
22
spinal cord
19
HFFc6
18
heart left ventricle
17
sigmoid colon
16
trophoblast cell
15
CD8-positive, alpha-beta memory T cell
15
H9
15
MCF-7
15
adipose tissue
15
foreskin keratinocyte
15
psoas muscle
14
natural killer cell
14
ovary
13
body of pancreas
13
gastrocnemius medialis
13
mononuclear cell
13
muscle of trunk
13
pericyte cell
13
thyroid gland
13
transverse colon
12
CD8-positive, alpha-beta T cell
12
adipocyte
12
chorionic villus
11
CD4-positive, alpha-beta T cell
11
endocrine pancreas
11
heart right ventricle
11
smooth muscle cell
10
GM12878
10
Peyer's patch
10
endothelial cell
10
endothelial cell of umbilical vein
10
fibroblast of lung
10
foreskin fibroblast
10
neural progenitor cell
10
neurosphere
10
pancreas
pituitary stalk
10
testis
10
upper lobe of left lung
9
T-helper 1 cell
9
layer of hippocampus
9
regulatory T cell
9
retina
9
skeletal muscle tissue
9
tibial nerve
8
T cell
8
T-helper 17 cell
8
T-helper 2 cell
8
aorta
8
breast epithelium
8
cardiac muscle cell
8
caudate nucleus
8
dermis blood vessel endothelial cell
8
esophagus squamous epithelium
8
fibroblast of dermis
8
hepatocyte
8
keratinocyte
8
left renal cortex interstitium
8
left renal pelvis
8
lower leg skin
8
lymphocyte
8
mesenchymal stem cell
8
right renal pelvis
7
SK-N-SH
7
dendritic cell
7
epithelial cell of prostate
7
esophagus
7
esophagus muscularis mucosa
7
fibroblast
7
fibroblast of cardiac tissue
7
macrophage
7
mammary gland epithelial cell
7
neutrophil
7
omental fat pad
7
parathyroid adenoma
7
right renal cortex interstitium
7
skeletal muscle myoblast
7
substantia nigra
7
temporal lobe
7
trophoblast
6
22Rv1
6
SK-N-DZ
6
T-cell
6
WI38
6
angular gyrus
6
ascending aorta
6
astrocyte
6
bronchial epithelial cell
6
chorion membrane
6
cingulate gyrus
6
colonic mucosa
6
coronary artery
6
duodenal mucosa
6
endodermal cell
6
endometrium adenocarcinoma
6
eye
6
fibroblast of breast
6
gastroesophageal sphincter
6
immortal human breast epithelial cell line cell
6
mucosa of rectum
6
muscle layer of colon
6
muscle layer of duodenum
6
myoepithelial cell of mammary gland
6
naive T cell
6
naive thymus-derived CD4-positive, alpha-beta T cell
6
olfactory receptor cell
6
prostate gland
6
stomach smooth muscle
thoracic aorta
6
tongue
6
vagina
5
HCT116
5
HepG2
5
LNCaP clone FGC
5
T47D
5
cerebellum
5
colon epithelial cell
5
foreskin melanocyte
5
kidney tubule cell
5
limb
5
mesendoderm
5
mesodermal cell
5
neuronal stem cell
5
right atrium auricular region
5
skin fibroblast
5
subcutaneous abdominal adipose tissue
5
tibial artery
5
urinary bladder
5
uterus
4
A673
4
Ammon's horn
4
Brodmann (1909) area 46
4
CyT49
4
HAP-1
4
HEK293
4
HT-29
4
HUES8
4
IMR-90
4
MM.1S
4
NAMALWA cell
4
OCI-LY7
4
PC-9
4
Panc1
4
bipolar neuron
4
dermis lymphatic vessel endothelial cell
4
endothelial cell of lymphatic vessel
4
frontal cortex
4
iPS DF 19.11
4
iPSC derived cell line
4
luminal epithelial cell of mammary gland
4
lung microvascular endothelial cell
4
mammary epithelial cell
4
mast cell
4
muscle cell
4
neural cell
4
osteoblast
4
pancreatic delta cell
4
peripheral blood mononuclear cell
4
right cardiac atrium
4
skeletal muscle satellite cell
3
A172
3
ACC112
3
ACHN
3
C4-2B
3
CD1c-positive myeloid dendritic cell
3
CMK
3
Caki2
3
DND-41
3
DOHH2
3
Daoy
Organ
8
connective tissue
Life stage
3
adult
3
embryonic
Date released
4
September, 2022
2
February, 2021
1
March, 2020
1
May, 2021
Software used
4
r
2
encode-ccres
1
abc
1
nospecificsoft_customcode
Lab
7
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
8
AMP
RFA
8
AMP
biosample_term_name!
pituitary stalk
thoracic aorta
Showing 8 of 8 results
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Download
FileSet
DSR902OPF
released
Annotation file set
: Candidate regulatory elements for BSS01261 mesenchymal stem cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR329XEJ
released
Annotation file set
: Candidate regulatory elements for BSS01260 mesenchymal stem cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR607MNF
released
Annotation file set
: Target gene predictions for BSS01261 mesenchymal stem cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR391CWH
released
Annotation file set
: Target gene predictions for BSS01260 mesenchymal stem cell from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR718ELE
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE mesenchymal stem cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR627LDJ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE mesenchymal stem cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR170XIW
released
Annotation file set
: enhancer-gene predicton of H1_Derived_Mesenchymal_Stem_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR333DPA
released
Annotation file set
: A target gene prediction annotation in Human Mesenchymal Stem Cell of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP