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Schema
Citing CMDGA
Clear Filters
Annotation type
6
accessible chromatin
6
chromatin state
6
target gene predictions
4
candidate regulatory elements
1
gene expression
1
variant allelic effects
Annotation Category
4
cis-regulatory elements
1
Genetic variant effects
Annotation type Category
3
snATAC-seq
2
ChIP-seq
2
DNase-seq
Available data
5
bed bed3+
File set status
5
released
Genome assembly (visualization)
5
hg19
2
GRCh38
Organism
5
Homo sapiens
Biosample type
3
primary cell
2
in vitro differentiated cells
Biosample term
21
heart
19
stomach
18
A549
17
brain
17
muscle of arm
16
lung
15
kidney
15
small intestine
14
adrenal gland
14
placenta
13
common myeloid progenitor, CD34-positive
13
large intestine
13
left lung
13
muscle of back
13
muscle of leg
12
B cell
11
right kidney
11
right lung
11
thymus
10
hematopoietic multipotent progenitor cell
10
renal cortex interstitium
10
renal pelvis
9
CD4-positive, alpha-beta memory T cell
9
fibroblast
9
left kidney
7
CD8-positive, alpha-beta memory T cell
7
adipose tissue
7
heart left ventricle
7
liver
7
spinal cord
6
K562
6
T cell
6
macrophage
6
mononuclear cell
6
natural killer cell
6
spleen
5
MCF-7
5
adipocyte
5
body of pancreas
5
endothelial cell
5
hepatocyte
5
sigmoid colon
5
smooth muscle cell
5
tibial nerve
5
trophoblast cell
4
CD14-positive monocyte
4
caudate nucleus
4
chorionic villus
4
coronary artery
4
endocrine pancreas
4
foreskin keratinocyte
4
gastrocnemius medialis
4
heart right ventricle
4
mammary gland epithelial cell
4
mast cell
4
muscle of trunk
4
myofibroblast cell
4
neural progenitor cell
4
ovary
4
psoas muscle
4
retina
4
right atrium auricular region
4
thyroid gland
4
tibial artery
4
transverse colon
3
HeLa-S3
3
Peyer's patch
3
T-helper 1 cell
3
T-helper 17 cell
3
T-helper 2 cell
3
ascending aorta
3
cardiac muscle cell
3
chorion membrane
3
endometrium adenocarcinoma
3
endothelial cell of lymphatic vessel
3
endothelial cell of umbilical vein
3
enterocyte
3
epithelial cell of esophagus
3
fibroblast of cardiac tissue
3
fibroblast of dermis
3
fibroblast of lung
3
frontal cortex
3
hepatic stellate cell
3
immortal human breast epithelial cell line cell
3
keratinocyte
3
layer of hippocampus
3
left renal cortex interstitium
3
left renal pelvis
3
naive T cell
3
neurosphere
3
pancreas
3
pericyte cell
3
regulatory T cell
3
right renal cortex interstitium
3
right renal pelvis
3
skeletal muscle myoblast
3
skeletal muscle tissue
3
testis
3
thoracic aorta
3
upper lobe of left lung
cardiac fibroblast
2
muscle of leg
2
22Rv1
2
Brodmann (1909) area 46
2
LNCaP clone FGC
2
MIN6
2
NAMALWA cell
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
SK-N-DZ
2
SK-N-SH
2
Schwann cell
2
T47D
2
angular gyrus
2
aorta
2
astrocyte of the cerebellum
2
astrocyte of the hippocampus
2
basal cell
2
breast epithelium
2
bronchial epithelial cell
2
cerebellum
2
choroid plexus epithelial cell
2
cingulate gyrus
2
colonic mucosa
2
dermis blood vessel endothelial cell
2
dermis lymphatic vessel endothelial cell
2
duodenal mucosa
2
endocardial cell
2
endodermal cell
2
epithelial cell of prostate
2
epithelial cell of proximal tubule
2
esophagus
2
esophagus muscularis mucosa
2
esophagus squamous epithelium
2
eye
2
fibroblast of breast
2
foreskin fibroblast
2
globus pallidus
2
glomerular endothelial cell
2
glomerular visceral epithelial cell
2
goblet cell
2
kidney capillary endothelial cell
2
kidney epithelial cell
2
kidney glomerular epithelial cell
2
kidney tubule cell
2
left cardiac atrium
2
limb
2
lower leg skin
2
medulla oblongata
2
mesenchymal stem cell
midbrain
2
middle frontal gyrus
2
mucosa of rectum
2
muscle cell
2
muscle layer of colon
2
muscle layer of duodenum
2
myoepithelial cell of mammary gland
2
neuronal stem cell
2
neutrophil
2
occipital lobe
2
omental fat pad
2
parathyroid adenoma
2
pons
2
prostate gland
2
putamen
2
regular ventricular cardiac myocyte
2
renal cortical epithelial cell
2
skeletal muscle cell
2
skeletal muscle fiber
2
skin fibroblast
2
smooth muscle cell of the brain vasculature
2
stomach smooth muscle
2
substantia nigra
2
superior temporal gyrus
2
temporal lobe
2
tongue
2
trophoblast
2
urinary bladder
2
vagina
2
vascular associated smooth muscle cell
1
brain microvascular endothelial cell
1
hindlimb muscle
1
left kidney
1
omental fat pad
1
retinal pigment epithelial cell
1
8988T
1
A172
1
A673
1
ACC112
1
ACHN
1
AG04449 cell
1
AG04450 cell
1
AG08395 cell
1
AG08396 cell
1
AG09309 cell
1
AG09319 cell
1
AG10803 cell
1
AG20443
1
Adipose SGBS cell line (adipocyte)
1
Ammon's horn
1
BE(2)-C
Disease term
2
heart failure
Organ
5
connective tissue
Life stage
3
adult
1
unknown
Date released
February, 2021
2
May, 2024
2
September, 2022
1
February, 2024
Software used
2
r
1
deltasvm
Lab
2
AMP-T2D consortium
2
Kyle Gaulton, UCSD
1
Bing Ren, UCSD
Project
5
AMP
RFA
3
AMP
2
AMP2
biosample_term_name!
cardiac fibroblast
BJ cell
midbrain
month_released!
February, 2021
Showing 5 of 5 results
table-tab-icon
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Download
FileSet
DSR095UPL
released
Annotation file set
: Candidate cis-Regulatory Elements (cCREs) of adipocyte derived from RV snATAC-seq
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR542XFW
released
Annotation file set
: Candidate cis-Regulatory Elements (cCREs) of adipocyte derived from LV snATAC-seq
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR611GAA
released
Annotation file set
: Candidate regulatory elements for BSS00039 adipocyte from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR854ZLT
released
Annotation file set
: Candidate regulatory elements for BSS00038 adipocyte from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR476AJZ
released
Annotation file set
: Variant allelic effects annotation of Adipocyte from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP