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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
6
accessible chromatin
5
chromatin state
5
target gene predictions
4
candidate regulatory elements
2
gene expression
1
binding sites
1
histone modifications
1
variant allelic effects
Annotation Category
4
cis-regulatory elements
1
Genetic variant effects
Annotation type Category
3
snATAC-seq
2
ChIP-seq
2
DNase-seq
Available data
5
bed bed3+
File set status
5
released
Genome assembly (visualization)
5
hg19
2
GRCh38
Organism
5
Homo sapiens
Biosample type
3
primary cell
2
in vitro differentiated cells
Biosample term
40
stomach
39
heart
34
muscle of arm
33
lung
30
brain
30
kidney
29
small intestine
28
adrenal gland
28
muscle of back
27
large intestine
27
muscle of leg
26
left lung
26
placenta
22
right lung
21
A549
21
renal cortex interstitium
21
right kidney
20
common myeloid progenitor, CD34-positive
20
renal pelvis
20
thymus
18
left kidney
17
hematopoietic multipotent progenitor cell
15
spleen
14
B cell
14
spinal cord
13
heart left ventricle
13
liver
11
foreskin keratinocyte
sigmoid colon
9
MCF-7
9
body of pancreas
9
fibroblast
9
natural killer cell
9
trophoblast cell
8
adipose tissue
8
chorionic villus
8
gastrocnemius medialis
8
muscle of trunk
8
ovary
8
thyroid gland
8
tibial nerve
8
transverse colon
7
H9
7
K562
7
Peyer's patch
7
endothelial cell of umbilical vein
7
foreskin fibroblast
7
heart right ventricle
7
left renal cortex interstitium
7
left renal pelvis
7
neurosphere
7
psoas muscle
7
retina
7
right renal pelvis
7
testis
7
upper lobe of left lung
6
CD14-positive monocyte
6
CD8-positive, alpha-beta T cell
6
cardiac muscle cell
6
caudate nucleus
6
dermis blood vessel endothelial cell
6
endocrine pancreas
6
esophagus squamous epithelium
6
layer of hippocampus
6
lower leg skin
6
macrophage
6
pancreas
6
right renal cortex interstitium
6
smooth muscle cell
5
CD4-positive, alpha-beta T cell
5
CD8-positive, alpha-beta memory T cell
5
HeLa-S3
5
T cell
5
adipocyte
5
ascending aorta
5
breast epithelium
5
coronary artery
5
endothelial cell
5
esophagus muscularis mucosa
5
gastroesophageal sphincter
5
hepatocyte
5
mononuclear cell
5
neural progenitor cell
5
omental fat pad
5
parathyroid adenoma
5
right atrium auricular region
5
subcutaneous abdominal adipose tissue
5
substantia nigra
5
temporal lobe
5
thoracic aorta
5
tibial artery
4
SK-N-DZ
4
SK-N-SH
4
T-helper 1 cell
4
angular gyrus
4
aorta
4
cingulate gyrus
4
colonic mucosa
4
duodenal mucosa
4
endodermal cell
4
esophagus
4
eye
4
fibroblast of breast
4
foreskin melanocyte
4
mast cell
4
mesenchymal stem cell
4
mesodermal cell
4
mucosa of rectum
4
muscle layer of colon
4
muscle layer of duodenum
4
myoepithelial cell of mammary gland
4
myofibroblast cell
4
neuronal stem cell
4
peripheral blood mononuclear cell
4
prostate gland
4
skeletal muscle tissue
4
stomach smooth muscle
4
tongue
4
trophoblast
4
vagina
3
CD4-positive, alpha-beta memory T cell
3
HEK293
3
LNCaP clone FGC
3
MCF 10A
3
T-helper 2 cell
3
T47D
3
cerebellum
3
endometrium adenocarcinoma
3
endothelial cell of lymphatic vessel
3
enterocyte
3
fibroblast of lung
3
frontal cortex
3
globus pallidus
3
glomerular visceral epithelial cell
3
hepatic stellate cell
3
immortal human breast epithelial cell line cell
3
kidney glomerular epithelial cell
3
kidney tubule cell
3
left cardiac atrium
3
limb
3
mammary gland epithelial cell
3
middle frontal gyrus
3
neural cell
3
putamen
3
regulatory T cell
3
subcutaneous adipose tissue
3
suprapubic skin
3
urinary bladder
3
uterus
2
cardiac fibroblast
2
muscle of leg
2
A172
2
A673
2
ACC112
2
ACHN
AG10803
2
Ammon's horn
2
Brodmann (1909) area 46
2
C4-2B
2
CMK
2
Caki2
2
DND-41
2
DOHH2
2
Daoy
2
EH
2
EL
2
ELF-1
2
ELR
2
G401
2
GM04503
2
GM04504
2
GM12878
2
GM23248
2
GM23338
2
H4
2
H54
2
HAP-1
2
HCT116
2
HL-60
2
HS-27A
2
HS-5
2
HT-29
2
HT1080
2
HUES48
2
HUES6
2
HUES64
2
HepG2
2
IMR-90
2
KBM-7
2
KMS-11
2
LHCN-M2
2
LNCAP
2
Loucy
2
M059J
2
MG63
2
MIN6
2
MM.1S
2
NAMALWA
2
NAMALWA cell
2
NB4
Disease term
2
heart failure
Organ
5
connective tissue
Life stage
4
adult
unknown
Date released
2
May, 2024
1
February, 2021
1
February, 2024
1
September, 2022
Software used
1
deltasvm
1
encode-ccres
1
r
Lab
2
AMP-T2D consortium
2
Kyle Gaulton, UCSD
1
Bing Ren, UCSD
Project
5
AMP
RFA
3
AMP
2
AMP2
biosample_term_name!
AG10803
sigmoid colon
relevant_life_stage!
unknown
Showing 5 of 5 results
table-tab-icon
matrix-icon
Download
FileSet
DSR095UPL
released
Annotation file set
: Candidate cis-Regulatory Elements (cCREs) of adipocyte derived from RV snATAC-seq
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR542XFW
released
Annotation file set
: Candidate cis-Regulatory Elements (cCREs) of adipocyte derived from LV snATAC-seq
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR611GAA
released
Annotation file set
: Candidate regulatory elements for BSS00039 adipocyte from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR462QHF
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE adipocyte
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR476AJZ
released
Annotation file set
: Variant allelic effects annotation of Adipocyte from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP