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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
6
accessible chromatin
6
chromatin state
6
target gene predictions
4
candidate regulatory elements
2
gene expression
1
binding sites
1
histone modifications
1
variant allelic effects
Annotation Category
4
cis-regulatory elements
1
Genetic variant effects
Annotation type Category
4
ChIP-seq
4
DNase-seq
1
snATAC-seq
Available data
5
bed bed3+
File set status
5
released
Genome assembly (visualization)
5
hg19
Organism
5
Homo sapiens
Biosample type
4
in vitro differentiated cells
1
primary cell
Biosample term
40
stomach
39
heart
34
muscle of arm
33
lung
30
brain
30
kidney
29
small intestine
28
adrenal gland
28
muscle of back
27
common myeloid progenitor, CD34-positive
27
large intestine
27
muscle of leg
26
left lung
26
placenta
22
right lung
21
A549
21
renal cortex interstitium
21
right kidney
20
renal pelvis
20
thymus
19
hematopoietic multipotent progenitor cell
18
left kidney
15
spleen
14
B cell
14
CD4-positive, alpha-beta memory T cell
14
spinal cord
13
heart left ventricle
13
liver
11
foreskin keratinocyte
10
sigmoid colon
9
MCF-7
9
body of pancreas
9
trophoblast cell
8
CD14-positive monocyte
8
CD4-positive, alpha-beta T cell
8
CD8-positive, alpha-beta memory T cell
8
adipose tissue
8
cardiac muscle cell
8
chorionic villus
8
gastrocnemius medialis
8
muscle of trunk
8
ovary
8
thyroid gland
8
tibial nerve
8
transverse colon
7
CD8-positive, alpha-beta T cell
7
H9
7
K562
7
Peyer's patch
7
endocrine pancreas
7
endothelial cell of umbilical vein
7
foreskin fibroblast
7
heart right ventricle
7
left renal cortex interstitium
7
left renal pelvis
7
mononuclear cell
7
neurosphere
7
psoas muscle
7
retina
7
right renal pelvis
7
testis
7
upper lobe of left lung
T cell
6
T-helper 1 cell
6
caudate nucleus
6
dermis blood vessel endothelial cell
6
esophagus squamous epithelium
6
fibroblast
6
fibroblast of lung
6
layer of hippocampus
6
lower leg skin
6
natural killer cell
6
pancreas
6
right renal cortex interstitium
6
skeletal muscle tissue
5
HeLa-S3
5
T-helper 17 cell
5
T-helper 2 cell
5
WI38
5
adipocyte
5
ascending aorta
5
breast epithelium
5
coronary artery
5
esophagus muscularis mucosa
5
gastroesophageal sphincter
5
hepatocyte
5
neural progenitor cell
5
omental fat pad
5
parathyroid adenoma
5
regulatory T cell
5
right atrium auricular region
5
skeletal muscle myoblast
5
subcutaneous abdominal adipose tissue
5
substantia nigra
5
temporal lobe
5
thoracic aorta
5
tibial artery
4
22Rv1
4
SK-N-DZ
4
SK-N-SH
4
T-cell
4
angular gyrus
4
aorta
4
bronchial epithelial cell
4
cingulate gyrus
4
colonic mucosa
4
duodenal mucosa
4
endodermal cell
4
epithelial cell of esophagus
4
epithelial cell of prostate
4
esophagus
4
eye
4
fibroblast of breast
4
fibroblast of dermis
4
foreskin melanocyte
4
keratinocyte
4
mammary gland epithelial cell
4
mesenchymal stem cell
4
mesodermal cell
4
mucosa of rectum
4
muscle layer of colon
4
muscle layer of duodenum
myoepithelial cell of mammary gland
4
naive thymus-derived CD4-positive, alpha-beta T cell
4
neutrophil
4
peripheral blood mononuclear cell
4
prostate gland
4
smooth muscle cell
4
stomach smooth muscle
4
tongue
4
trophoblast
4
vagina
3
HEK293
3
LNCaP clone FGC
3
MCF 10A
3
T47D
3
astrocyte of the cerebellum
3
astrocyte of the hippocampus
3
cardiac fibroblast
3
cerebellum
3
chorion membrane
3
choroid plexus epithelial cell
3
endometrium adenocarcinoma
3
enterocyte
3
epithelial cell of proximal tubule
3
fibroblast of cardiac tissue
3
frontal cortex
3
globus pallidus
3
glomerular endothelial cell
3
glomerular visceral epithelial cell
3
immortal human breast epithelial cell line cell
3
kidney epithelial cell
3
kidney glomerular epithelial cell
3
kidney tubule cell
3
left cardiac atrium
3
limb
3
lung microvascular endothelial cell
3
macrophage
3
mammary epithelial cell
3
middle frontal gyrus
3
myofibroblast cell
3
naive T cell
3
neural cell
3
putamen
3
renal cortical epithelial cell
3
skeletal muscle cell
3
smooth muscle cell of the brain vasculature
3
subcutaneous adipose tissue
3
suprapubic skin
3
urinary bladder
3
uterus
2
cardiac fibroblast
2
muscle of leg
2
A172
2
A673
2
ACC112
2
ACHN
2
AG10803
2
Ammon's horn
2
Brodmann (1909) area 46
2
C4-2B
2
CD1c-positive myeloid dendritic cell
2
CMK
2
Caki2
2
DND-41
2
DOHH2
2
Daoy
2
EH
2
EL
2
ELF-1
2
ELR
2
G401
2
GM04503
2
GM04504
2
GM06990
2
GM08714
2
GM10248
2
GM10266
2
GM12864
2
GM12865
Organ
5
connective tissue
Life stage
2
adult
2
unknown
Date released
2
February, 2021
2
September, 2022
1
February, 2024
Software used
2
encode-ccres
2
r
1
deltasvm
Lab
4
AMP-T2D consortium
1
Bing Ren, UCSD
Project
5
AMP
RFA
5
AMP
biosample_term_name!
HS-27A
T cell
myoepithelial cell of mammary gland
Showing 5 of 5 results
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Download
FileSet
DSR611GAA
released
Annotation file set
: Candidate regulatory elements for BSS00039 adipocyte from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR854ZLT
released
Annotation file set
: Candidate regulatory elements for BSS00038 adipocyte from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR810TFD
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE adipocyte
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR462QHF
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE adipocyte
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR476AJZ
released
Annotation file set
: Variant allelic effects annotation of Adipocyte from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP